Adam J. Simpkin

Crown Street
Liverpool, ENG L697ZB, United Kingdom

Last Updated: 09/26/2026

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Found 29 publications

Physical Implausibility of Carbohydrate Ligands in Results of Deep Learning-Based Cofolding Methods.

Physical Implausibility of Carbohydrate Ligands in Results of Deep Learning-Based Cofolding Methods.

Journal: Journal of chemical information and modeling

Published: March 23, 2026

Structure and signaling mechanism of Helicobacter pylori transducer-like protein D.

Structure and signaling mechanism of Helicobacter pylori transducer-like protein D.

Journal: bioRxiv : the preprint server for biology

Published: February 06, 2026

Unique adaptations in sulfatases underpin colonic mucin degradation by Akkermansia muciniphila.

Unique adaptations in sulfatases underpin colonic mucin degradation by Akkermansia muciniphila.

Journal: Nature microbiology

Published: September 12, 2025

ABCFold: easier running and comparison of AlphaFold 3, Boltz-1, and Chai-1.

ABCFold: easier running and comparison of AlphaFold 3, Boltz-1, and Chai-1.

Journal: Bioinformatics advances

Published: March 26, 2025

Slice'N'Dice: maximizing the value of predicted models for structural biologists.

Slice'N'Dice: maximizing the value of predicted models for structural biologists.

Journal: Acta crystallographica. Section D, Structural biology

Published: November 18, 2024

AlphaFold 2, but not AlphaFold 3, predicts confident but unrealistic β-solenoid structures for repeat proteins.

AlphaFold 2, but not AlphaFold 3, predicts confident but unrealistic β-solenoid structures for repeat proteins.

Journal: Computational and structural biotechnology journal

Published: October 31, 2024

The success rate of processed predicted models in molecular replacement: implications for experimental phasing in the AlphaFold era.

The success rate of processed predicted models in molecular replacement: implications for experimental phasing in the AlphaFold era.

Journal: Acta crystallographica. Section D, Structural biology

Published: August 06, 2024

Using deep-learning predictions reveals a large number of register errors in PDB depositions.

Using deep-learning predictions reveals a large number of register errors in PDB depositions.

Journal: IUCrJ

Published: July 08, 2024

Tertiary structure assessment at CASP15.

Tertiary structure assessment at CASP15.

Journal: Proteins

Published: May 24, 2023

Assessment of three-dimensional RNA structure prediction in CASP15.

Assessment of three-dimensional RNA structure prediction in CASP15.

Journal: bioRxiv : the preprint server for biology

Published: May 10, 2023

Assessment of three-dimensional RNA structure prediction in CASP15.

Assessment of three-dimensional RNA structure prediction in CASP15.

Journal: Proteins

Published: April 25, 2023

Predicted models and CCP4.

Predicted models and CCP4.

Journal: Acta crystallographica. Section D, Structural biology

Published: April 12, 2023

Showing 1-12 of 29

Last Updated: 09/26/2026