Adrian M. Altenhoff

Lausanne, VD 1015, Switzerland

Last Updated: 09/26/2026

Save publications for later

Sign Up

Not sure about your diagnosis?

Check Your Symptoms

Found 39 publications

On the state of protein function prediction: a report on the fourth CAFA challenge.

On the state of protein function prediction: a report on the fourth CAFA challenge.

Journal: bioRxiv : the preprint server for biology

Published: May 18, 2026

On the state of protein function prediction: a report on the fourth CAFA challenge.

On the state of protein function prediction: a report on the fourth CAFA challenge.

Journal: bioRxiv : the preprint server for biology

Published: May 18, 2026

OrthoXML-Tools: A Toolkit for Manipulating OrthoXML Files for Orthology Data.

OrthoXML-Tools: A Toolkit for Manipulating OrthoXML Files for Orthology Data.

Journal: Journal of molecular evolution

Published: April 17, 2025

A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications.

A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications.

Journal: GigaScience

Published: October 07, 2024

EdgeHOG: a method for fine-grained ancestral gene order inference at large scale.

EdgeHOG: a method for fine-grained ancestral gene order inference at large scale.

Journal: Nature ecology & evolution

Published: August 01, 2024

Annotation matters: the effect of structural gene annotation on orthology inference.

Annotation matters: the effect of structural gene annotation on orthology inference.

Journal: Bioinformatics (Oxford, England)

Published: July 10, 2024

New developments for the Quest for Orthologs benchmark service.

New developments for the Quest for Orthologs benchmark service.

Journal: NAR genomics and bioinformatics

Published: July 09, 2024

Orthology inference at scale with FastOMA.

Orthology inference at scale with FastOMA.

Journal: Nature methods

Published: January 16, 2024

DrosOMA: the Drosophila Orthologous Matrix browser.

DrosOMA: the Drosophila Orthologous Matrix browser.

Journal: F1000Research

Published: January 12, 2024

OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem.

OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem.

Journal: Nucleic acids research

Published: September 15, 2023

Read2Tree: scalable and accurate phylogenetic trees from raw reads.

Read2Tree: scalable and accurate phylogenetic trees from raw reads.

Journal: bioRxiv : the preprint server for biology

Published: December 23, 2022

Quality assessment of gene repertoire annotations with OMArk.

Quality assessment of gene repertoire annotations with OMArk.

Journal: Nature biotechnology

Published: December 16, 2022

Showing 1-12 of 39

Last Updated: 09/26/2026