Alexey Stupnikov

Moscow, MOW 123592, Russian Federation

Last Updated: 09/26/2026

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Found 17 publications

NEXT-scASV: a Nextflow pipeline for allele-specific variant calling from single-cell RNA-seq data.

NEXT-scASV: a Nextflow pipeline for allele-specific variant calling from single-cell RNA-seq data.

Journal: GigaScience

Published: September 15, 2025

GPU-accelerated Kendall distance computation for large or sparse data.

GPU-accelerated Kendall distance computation for large or sparse data.

Journal: GigaScience

Published: March 28, 2024

scATAC-seq preprocessing and imputation evaluation system for visualization, clustering and digital footprinting.

scATAC-seq preprocessing and imputation evaluation system for visualization, clustering and digital footprinting.

Journal: Briefings in bioinformatics

Published: August 24, 2023

Assessing the Differential Methylation Analysis Quality for Microarray and NGS Platforms.

Assessing the Differential Methylation Analysis Quality for Microarray and NGS Platforms.

Journal: International journal of molecular sciences

Published: April 11, 2023

Approaches for sRNA Analysis of Human RNA-Seq Data: Comparison, Benchmarking.

Approaches for sRNA Analysis of Human RNA-Seq Data: Comparison, Benchmarking.

Journal: International journal of molecular sciences

Published: December 07, 2022

In Silico Drug Repurposing in Multiple Sclerosis Using scRNA-Seq Data.

In Silico Drug Repurposing in Multiple Sclerosis Using scRNA-Seq Data.

Journal: International journal of molecular sciences

Published: December 07, 2022

Hobotnica: exploring molecular signature quality.

Hobotnica: exploring molecular signature quality.

Journal: F1000Research

Published: August 04, 2022

ITAS: Integrated Transcript Annotation for Small RNA.

ITAS: Integrated Transcript Annotation for Small RNA.

Journal: Non-coding RNA

Published: February 25, 2022

Hobotnica: exploring molecular signature quality.

Hobotnica: exploring molecular signature quality.

Journal: F1000Research

Published: November 19, 2021

Robustness of differential gene expression analysis of RNA-seq.

Robustness of differential gene expression analysis of RNA-seq.

Journal: Computational and structural biotechnology journal

Published: December 03, 2020

NUQA: Estimating Cancer Spatial and Temporal Heterogeneity and Evolution through Alignment-Free Methods.

NUQA: Estimating Cancer Spatial and Temporal Heterogeneity and Evolution through Alignment-Free Methods.

Journal: Molecular biology and evolution

Published: August 20, 2019

Clinically Actionable Insights into Initial and Matched Recurrent Glioblastomas to Inform Novel Treatment Approaches.

Clinically Actionable Insights into Initial and Matched Recurrent Glioblastomas to Inform Novel Treatment Approaches.

Journal: Journal of oncology

Published: June 05, 2019

Showing 1-12 of 17

Last Updated: 09/26/2026