Amanda C. Carroll - Publications

Targeted metatranscriptomic detection of viruses from floors for simultaneous evaluation of respiratory disease burden and viral variant identification.

Journal: mSphere

Published: April 20, 2026

Prediction of genetic relatedness of Escherichia coli using neighbor typing: a tool for rapid outbreak detection.

Journal: Antimicrobial agents and chemotherapy

Published: January 26, 2026

Using routine asymptomatic Clostridioides difficile testing to identify patients at high risk of developing C. difficile infection during hematopoietic cell transplantation.

Journal: Journal of the Association of Medical Microbiology and Infectious Disease Canada = Journal officiel de l'Association pour la microbiologie medicale et l'infectiologie Canada

Published: November 28, 2025

Transmission of carbapenemase-producing Enterobacter in Ontario, Canada: a retrospective genomic analysis.

Journal: Emerging microbes & infections

Published: November 26, 2025

Rapid inference of antibiotic susceptibility phenotype of uropathogens using metagenomic sequencing with neighbor typing.

Journal: Microbiology spectrum

Published: November 29, 2024

Systematic in vitro optimization of antimicrobial peptides against Escherichia coli.

Journal: JAC-antimicrobial resistance

Published: December 15, 2023

Hybrid Nanopore-Illumina Assemblies for Five Extraintestinal Pathogenic Escherichia coli Isolates.

Journal: Microbiology resource announcements

Published: February 12, 2021

Plasmid persistence: costs, benefits, and the plasmid paradox.

Journal: Canadian journal of microbiology

Published: March 22, 2018