Avijit Mainan

Navadwip, WB 741246, India

Last Updated: 09/26/2026

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Found 10 publications

Structural Topology-based Electrostatic Model (STEM) Reveals Ion-Coordination Exchange as a Driver of RNA Folding Dynamics.

Structural Topology-based Electrostatic Model (STEM) Reveals Ion-Coordination Exchange as a Driver of RNA Folding Dynamics.

Journal: bioRxiv : the preprint server for biology

Published: July 10, 2026

Reconciling Cryo-EM and Crystallographic Views of RNA Folding through Atomistic Structure-Based Simulations: Roles of Ionic Conditions and Truncation of Flexible Elements.

Reconciling Cryo-EM and Crystallographic Views of RNA Folding through Atomistic Structure-Based Simulations: Roles of Ionic Conditions and Truncation of Flexible Elements.

Journal: The journal of physical chemistry letters

Published: May 05, 2026

Free Energy Landscape of Magnesium Chelation Reveals Dynamic Prechelate Complexes Stabilized by Hybrid Inner-Outer-Sphere RNA-Ion Coordination.

Free Energy Landscape of Magnesium Chelation Reveals Dynamic Prechelate Complexes Stabilized by Hybrid Inner-Outer-Sphere RNA-Ion Coordination.

Journal: The journal of physical chemistry. B

Published: March 10, 2026

Critical Role of Mg2+ Ions in RNA Folding Transitions: Anchoring the A-Minor Twist in the SAM-II Riboswitch.

Critical Role of Mg2+ Ions in RNA Folding Transitions: Anchoring the A-Minor Twist in the SAM-II Riboswitch.

Journal: The journal of physical chemistry. B

Published: September 02, 2025

Emergence of a dynamic G-tetraplex scaffold: uncovering low salt-induced conformational heterogeneity and the folding mechanism of telomeric DNA.

Emergence of a dynamic G-tetraplex scaffold: uncovering low salt-induced conformational heterogeneity and the folding mechanism of telomeric DNA.

Journal: Physical chemistry chemical physics : PCCP

Published: March 20, 2025

Magnesium Regulates RNA Ring Dynamics and Folding in Subgenomic Flaviviral RNA.

Magnesium Regulates RNA Ring Dynamics and Folding in Subgenomic Flaviviral RNA.

Journal: The journal of physical chemistry. B

Published: September 30, 2024

Influence of ion and hydration atmospheres on RNA structure and dynamics: insights from advanced theoretical and computational methods.

Influence of ion and hydration atmospheres on RNA structure and dynamics: insights from advanced theoretical and computational methods.

Journal: Chemical communications (Cambridge, England)

Published: March 19, 2024

Dynamic Counterion Condensation Model Decodes Functional Dynamics of RNA Pseudoknot in SARS-CoV-2: Control of Ion-Mediated Pierced Lasso Topology.

Dynamic Counterion Condensation Model Decodes Functional Dynamics of RNA Pseudoknot in SARS-CoV-2: Control of Ion-Mediated Pierced Lasso Topology.

Journal: The journal of physical chemistry letters

Published: November 13, 2023

Acquired resistance to KRAS G12C small-molecule inhibitors via genetic/nongenetic mechanisms in lung cancer.

Acquired resistance to KRAS G12C small-molecule inhibitors via genetic/nongenetic mechanisms in lung cancer.

Journal: Science advances

Published: October 13, 2023

Dynamic effects of the spine of hydrated magnesium on viral RNA pseudoknot structure.

Dynamic effects of the spine of hydrated magnesium on viral RNA pseudoknot structure.

Journal: Physical chemistry chemical physics : PCCP

Published: October 04, 2022

Showing 1-10 of 10

Last Updated: 09/26/2026