Bernhard Y. Renard

Potsdam, BB 14482, Germany

Last Updated: 09/26/2026

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Found 101 publications

usiGrabber: automating the curation of proteomics spectra data at scale, making large datasets ready for use in machine learning systems.

usiGrabber: automating the curation of proteomics spectra data at scale, making large datasets ready for use in machine learning systems.

Journal: Bioinformatics (Oxford, England)

Published: August 24, 2026

BaGGLS: a Bayesian shrinkage framework for interpretable modeling of interactions in high-dimensional biological data.

BaGGLS: a Bayesian shrinkage framework for interpretable modeling of interactions in high-dimensional biological data.

Journal: Bioinformatics (Oxford, England)

Published: August 24, 2026

Foundation model enables interpretable open and error-tolerant searching for mass spectrometry-based proteomics.

Foundation model enables interpretable open and error-tolerant searching for mass spectrometry-based proteomics.

Journal: Bioinformatics (Oxford, England)

Published: July 07, 2026

Disease duration impacts intestinal gene expression profiles in Crohn's disease but not in ulcerative colitis.

Disease duration impacts intestinal gene expression profiles in Crohn's disease but not in ulcerative colitis.

Journal: Journal of Crohn's & colitis

Published: October 09, 2025

The AIR·MS data platform for artificial intelligence in healthcare.

The AIR·MS data platform for artificial intelligence in healthcare.

Journal: JAMIA open

Published: July 23, 2025

Selecting synthetic data for successful simulation-based transfer learning in dynamical biological systems.

Selecting synthetic data for successful simulation-based transfer learning in dynamical biological systems.

Journal: BMC bioinformatics

Published: July 22, 2025

Distinct perturbances in metabolic pathways associate with disease progression in inflammatory bowel disease.

Distinct perturbances in metabolic pathways associate with disease progression in inflammatory bowel disease.

Journal: Journal of Crohn's & colitis

Published: May 18, 2025

Automating clinical phenotyping using natural language processing.

Automating clinical phenotyping using natural language processing.

Journal: Communications medicine

Published: November 26, 2024

Moving Toward Metaproteogenomics: A Computational Perspective on Analyzing Microbial Samples via Proteogenomics.

Moving Toward Metaproteogenomics: A Computational Perspective on Analyzing Microbial Samples via Proteogenomics.

Journal: Methods in molecular biology (Clifton, N.J.)

Published: October 22, 2024

PEPerMINT: peptide abundance imputation in mass spectrometry-based proteomics using graph neural networks.

PEPerMINT: peptide abundance imputation in mass spectrometry-based proteomics using graph neural networks.

Journal: Bioinformatics (Oxford, England)

Published: September 04, 2024

End-to-end simulation of nanopore sequencing signals with feed-forward transformers.

End-to-end simulation of nanopore sequencing signals with feed-forward transformers.

Journal: Bioinformatics (Oxford, England)

Published: August 13, 2024

Hitac: a hierarchical taxonomic classifier for fungal ITS sequences compatible with QIIME2.

Hitac: a hierarchical taxonomic classifier for fungal ITS sequences compatible with QIIME2.

Journal: BMC bioinformatics

Published: March 15, 2024

Showing 1-12 of 101

Last Updated: 09/26/2026