Carolina Wahlby

Uppsala, C, Sweden

Last Updated: 09/26/2026

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Found 67 publications

Streamlining Multiplexed Tissue Image Analysis with PIPΣX: An Integrated Automated Pipeline for Image Processing and EXploration for Diverse Tissue Types.

Streamlining Multiplexed Tissue Image Analysis with PIPΣX: An Integrated Automated Pipeline for Image Processing and EXploration for Diverse Tissue Types.

Journal: bioRxiv : the preprint server for biology
Published: July 14, 2025

Culture-free detection of bacteria from blood for rapid sepsis diagnosis.

Culture-free detection of bacteria from blood for rapid sepsis diagnosis.

Journal: NPJ digital medicine
Published: June 27, 2025

Rapid label-free identification of seven bacterial species using microfluidics, single-cell time-lapse phase-contrast microscopy, and deep learning-based image and video classification.

Rapid label-free identification of seven bacterial species using microfluidics, single-cell time-lapse phase-contrast microscopy, and deep learning-based image and video classification.

Journal: PloS one
Published: April 10, 2025

Predicting allergy and postpartum depression from an incomplete compositional microbiome.

Predicting allergy and postpartum depression from an incomplete compositional microbiome.

Journal: BMC genomics
Published: April 07, 2025

Discovery of tumour indicating morphological changes in benign prostate biopsies through AI.

Discovery of tumour indicating morphological changes in benign prostate biopsies through AI.

Journal: Scientific reports
Published: March 21, 2025

CombiANT reader: Deep learning-based automatic image processing tool to robustly quantify antibiotic interactions.

CombiANT reader: Deep learning-based automatic image processing tool to robustly quantify antibiotic interactions.

Journal: PLOS digital health
Published: October 15, 2024

Combining spatial transcriptomics with tissue morphology.

Combining spatial transcriptomics with tissue morphology.

Journal: Nature communications
Published: August 26, 2024

A clinical prostate biopsy dataset with undetected cancer.

A clinical prostate biopsy dataset with undetected cancer.

Journal: Scientific data
Published: June 20, 2024

Harmonizing the Generation and Pre-publication Stewardship of FAIR bioimage data.

Harmonizing the Generation and Pre-publication Stewardship of FAIR bioimage data.

Journal: ArXiv
Published: February 14, 2024

Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by In Situ Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim.

Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by In Situ Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim.

Journal: Clinical cancer research : an official journal of the American Association for Cancer Research
Published: November 06, 2023

DEPICTER: Deep representation clustering for histology annotation.

DEPICTER: Deep representation clustering for histology annotation.

Journal: Computers in biology and medicine
Published: September 19, 2023

Label-free deep learning-based species classification of bacteria imaged by phase-contrast microscopy.

Label-free deep learning-based species classification of bacteria imaged by phase-contrast microscopy.

Journal: PLoS computational biology
Published: May 14, 2023
Showing 1-12 of 67

Last Updated: 09/26/2026