Christophe Avenel

Uppsala, C, Sweden

Last Updated: 09/26/2026

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Found 16 publications

An integrated protocol for multiplexed DNA FISH and protein detection in large tissue sections.

An integrated protocol for multiplexed DNA FISH and protein detection in large tissue sections.

Journal: Journal of histotechnology

Published: July 24, 2026

Streamlining Multiplexed Tissue Image Analysis with PIPΣX: An Integrated Automated Pipeline for Image Processing and EXploration for Diverse Tissue Types.

Streamlining Multiplexed Tissue Image Analysis with PIPΣX: An Integrated Automated Pipeline for Image Processing and EXploration for Diverse Tissue Types.

Journal: bioRxiv : the preprint server for biology

Published: July 14, 2025

Machine learning framework for investigating nano- and micro-scale particle diffusion in colonic mucus.

Machine learning framework for investigating nano- and micro-scale particle diffusion in colonic mucus.

Journal: Journal of nanobiotechnology

Published: May 30, 2025

Discovery of tumour indicating morphological changes in benign prostate biopsies through AI.

Discovery of tumour indicating morphological changes in benign prostate biopsies through AI.

Journal: Scientific reports

Published: March 21, 2025

Spatiotemporal gene expression and cellular dynamics of the developing human heart.

Spatiotemporal gene expression and cellular dynamics of the developing human heart.

Journal: Nature genetics

Published: August 29, 2024

Combining spatial transcriptomics with tissue morphology.

Combining spatial transcriptomics with tissue morphology.

Journal: Nature communications

Published: August 26, 2024

A clinical prostate biopsy dataset with undetected cancer.

A clinical prostate biopsy dataset with undetected cancer.

Journal: Scientific data

Published: June 20, 2024

Cellular architecture of evolving neuroinflammatory lesions and multiple sclerosis pathology.

Cellular architecture of evolving neuroinflammatory lesions and multiple sclerosis pathology.

Journal: Cell

Published: June 18, 2023

TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data.

TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data.

Journal: Heliyon

Published: February 20, 2023

Optimizing Xenium In Situ data utility by quality assessment and best-practice analysis workflows.

Optimizing Xenium In Situ data utility by quality assessment and best-practice analysis workflows.

Journal: Nature methods

Published: February 13, 2023

Visualization and quality control tools for large-scale multiplex tissue analysis in TissUUmaps3.

Visualization and quality control tools for large-scale multiplex tissue analysis in TissUUmaps3.

Journal: Biological imaging

Published: November 08, 2022

Automated detection of vascular remodeling in tumor-draining lymph nodes by the deep-learning tool HEV-finder.

Automated detection of vascular remodeling in tumor-draining lymph nodes by the deep-learning tool HEV-finder.

Journal: The Journal of pathology

Published: March 29, 2022

Showing 1-12 of 16

Last Updated: 09/26/2026