Danielle J. Ingle

Melbourne, VIC, Australia

Last Updated: 09/26/2026

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Found 51 publications

The Escherichia coli F plasmidome: an Australian perspective.

The Escherichia coli F plasmidome: an Australian perspective.

Journal: Microbial genomics

Published: April 24, 2026

Exploration of the genomic diversity of third-generation cephalosporin-resistant Escherichia coli in Australian clinical settings.

Exploration of the genomic diversity of third-generation cephalosporin-resistant Escherichia coli in Australian clinical settings.

Journal: Microbial genomics

Published: January 13, 2026

Genomic and epidemiological characteristics of Shigella boydii in Australia, 1991-2022.

Genomic and epidemiological characteristics of Shigella boydii in Australia, 1991-2022.

Journal: Pathogens and global health

Published: October 23, 2025

Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi.

Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi.

Journal: bioRxiv : the preprint server for biology

Published: August 06, 2025

Distinct adaptation and epidemiological success of different genotypes within Salmonella enterica serovar Dublin.

Distinct adaptation and epidemiological success of different genotypes within Salmonella enterica serovar Dublin.

Journal: eLife

Published: June 25, 2025

Quantifying plasmid movement in drug-resistant Shigella species using phylodynamic inference.

Quantifying plasmid movement in drug-resistant Shigella species using phylodynamic inference.

Journal: PLoS pathogens

Published: April 24, 2025

The complete genome sequence of the crayfish pathogen Candidatus Paracoxiella cheracis n.g. n.sp. provides insight into pathogenesis and the phylogeny of the Coxiellaceae family.

The complete genome sequence of the crayfish pathogen Candidatus Paracoxiella cheracis n.g. n.sp. provides insight into pathogenesis and the phylogeny of the Coxiellaceae family.

Journal: mSphere

Published: March 10, 2025

Exploring SNP filtering strategies: the influence of strict vs soft core.

Exploring SNP filtering strategies: the influence of strict vs soft core.

Journal: Microbial genomics

Published: January 15, 2025

Salmonella pathogenicity islands in the genomic era.

Salmonella pathogenicity islands in the genomic era.

Journal: Trends in microbiology

Published: December 01, 2024

Surveillance of travel-associated isolates elucidates the diversity of non-pandemic Vibrio cholerae.

Surveillance of travel-associated isolates elucidates the diversity of non-pandemic Vibrio cholerae.

Journal: Microbial genomics

Published: October 16, 2024

Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi.

Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi.

Journal: Genome medicine

Published: October 04, 2024

How does date-rounding affect phylodynamic inference for public health?

How does date-rounding affect phylodynamic inference for public health?

Journal: PLoS computational biology

Published: September 16, 2024

Showing 1-12 of 51

Last Updated: 09/26/2026