David Jakubec
Prague, PR, Czech Republic
Last Updated: 09/26/2026
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Found 15 publications
PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures.
Journal: Nucleic acids research
Published: March 25, 2022
TLR8/TLR7 dysregulation due to a novel TLR8 mutation causes severe autoimmune hemolytic anemia and autoinflammation in identical twins.
Journal: American journal of hematology
Published: December 23, 2021
Amino Acid Interactions (INTAA) web server v2.0: a single service for computation of energetics and conservation in biomolecular 3D structures.
Journal: Nucleic acids research
Published: March 10, 2021
Hydrophobic Amino Acids as Universal Elements of Protein-Induced DNA Structure Deformation.
Journal: International journal of molecular sciences
Published: April 30, 2020
Efficient Estimation of Absolute Binding Free Energy for a Homeodomain-DNA Complex from Nonequilibrium Pulling Simulations.
Journal: Journal of chemical theory and computation
Published: March 27, 2020
Membrane Protein Dimerization in Cell-Derived Lipid Membranes Measured by FRET with MC Simulations.
Journal: Biophysical journal
Published: August 26, 2019
Can All-Atom Molecular Dynamics Simulations Quantitatively Describe Homeodomain-DNA Binding Equilibria?
Journal: Journal of chemical theory and computation
Published: February 27, 2019
Widespread evolutionary crosstalk among protein domains in the context of multi-domain proteins.
Journal: PloS one
Published: May 24, 2018
3DPatch: fast 3D structure visualization with residue conservation.
Journal: Bioinformatics (Oxford, England)
Published: March 20, 2018
Noncovalent Interactions in Specific Recognition Motifs of Protein-DNA Complexes.
Journal: Journal of chemical theory and computation
Published: December 20, 2016
Last Updated: 09/26/2026