De-shuang F. Huang

No. 150, Jimo Road
Pudong, 200120, China

Last Updated: 09/26/2026

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Found 112 publications

scKanFormer: A Transformer-KAN framework with biologically informed attention for cell type annotation in large-scale scRNA-seq data.

scKanFormer: A Transformer-KAN framework with biologically informed attention for cell type annotation in large-scale scRNA-seq data.

Journal: PLoS computational biology

Published: April 08, 2026

LMSCDA: A Secondary Structure Enhanced Language Model for Predicting CircRNA and Disease Associations.

LMSCDA: A Secondary Structure Enhanced Language Model for Predicting CircRNA and Disease Associations.

Journal: IEEE journal of biomedical and health informatics

Published: March 10, 2026

Correction: SpaMWGDA: Identifying spatial domains of spatial transcriptomes using multi-view weighted fusion graph convolutional network and data augmentation.

Correction: SpaMWGDA: Identifying spatial domains of spatial transcriptomes using multi-view weighted fusion graph convolutional network and data augmentation.

Journal: PLoS computational biology

Published: January 06, 2026

GraphLooper: predicting chromatin loops based on hierarchical multi-view graph pooling method.

GraphLooper: predicting chromatin loops based on hierarchical multi-view graph pooling method.

Journal: Briefings in bioinformatics

Published: October 21, 2025

SpaLSTF: Diffusion-based generative model with BiLSTM and XCA-Transformer for spatial transcriptomics imputation.

SpaLSTF: Diffusion-based generative model with BiLSTM and XCA-Transformer for spatial transcriptomics imputation.

Journal: PLoS computational biology

Published: October 18, 2025

A scalable computational framework for predicting gene expression from candidate cis-regulatory elements.

A scalable computational framework for predicting gene expression from candidate cis-regulatory elements.

Journal: Genome research

Published: July 21, 2025

SpaMWGDA: Identifying spatial domains of spatial transcriptomes using multi-view weighted fusion graph convolutional network and data augmentation.

SpaMWGDA: Identifying spatial domains of spatial transcriptomes using multi-view weighted fusion graph convolutional network and data augmentation.

Journal: PLoS computational biology

Published: July 04, 2025

RGCN-BA: relational graph convolutional network with batch awareness for single-cell RNA sequencing clustering.

RGCN-BA: relational graph convolutional network with batch awareness for single-cell RNA sequencing clustering.

Journal: Briefings in bioinformatics

Published: April 17, 2025

Integrating Transformer and Graph Attention Network for circRNA-miRNA Interaction Prediction.

Integrating Transformer and Graph Attention Network for circRNA-miRNA Interaction Prediction.

Journal: IEEE journal of biomedical and health informatics

Published: April 15, 2025

Publisher Correction: Interpretable deep learning of single-cell and epigenetic data reveals novel molecular insights in aging.

Publisher Correction: Interpretable deep learning of single-cell and epigenetic data reveals novel molecular insights in aging.

Journal: Scientific reports

Published: April 02, 2025

Multi-species integration, alignment and annotation of single-cell RNA-seq data with CAMEX.

Multi-species integration, alignment and annotation of single-cell RNA-seq data with CAMEX.

Journal: Nature communications

Published: March 06, 2025

Interpretable deep learning of single-cell and epigenetic data reveals novel molecular insights in aging.

Interpretable deep learning of single-cell and epigenetic data reveals novel molecular insights in aging.

Journal: Scientific reports

Published: November 15, 2024

Showing 1-12 of 112

Last Updated: 09/26/2026