Denise Kuhnert

Berlin, BE, Germany

Last Updated: 09/26/2026

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Found 61 publications

Nextstrain automates real-time phylodynamic analysis of open data for endemic and emerging pathogens.

Nextstrain automates real-time phylodynamic analysis of open data for endemic and emerging pathogens.

Journal: bioRxiv : the preprint server for biology

Published: April 03, 2026

Nextstrain automates real-time phylodynamic analysis of open data for endemic and emerging pathogens.

Nextstrain automates real-time phylodynamic analysis of open data for endemic and emerging pathogens.

Journal: bioRxiv : the preprint server for biology

Published: April 03, 2026

Lassa Virus Live Tracking and Lineage Assignment: How Nextstrain Can Enhance Surveillance and Public Health in Africa and Beyond.

Lassa Virus Live Tracking and Lineage Assignment: How Nextstrain Can Enhance Surveillance and Public Health in Africa and Beyond.

Journal: Emerging microbes & infections

Published: March 04, 2026

Lassa virus live tracking and lineage assignment: how nextstrain can enhance surveillance and public health in Africa and beyond.

Lassa virus live tracking and lineage assignment: how nextstrain can enhance surveillance and public health in Africa and beyond.

Journal: Emerging microbes & infections

Published: March 04, 2026

Sequence to structure insights into Lassa virus population-level biophysical properties and glycoprotein structure catalogue.

Sequence to structure insights into Lassa virus population-level biophysical properties and glycoprotein structure catalogue.

Journal: Npj viruses

Published: February 06, 2026

SIMPLICITY is an agent-based, multi-scale mathematical model to study SARS-CoV-2 intra- and between-host evolution.

SIMPLICITY is an agent-based, multi-scale mathematical model to study SARS-CoV-2 intra- and between-host evolution.

Journal: Communications biology

Published: July 29, 2025

CLASV: Rapid Lassa virus lineage assignment with random forest.

CLASV: Rapid Lassa virus lineage assignment with random forest.

Journal: PLoS neglected tropical diseases

Published: June 17, 2025

Phylogenetic meta-analysis of persistent SARS-CoV-2 infections in immunocompromised individuals highlights the challenges of robust evolutionary rate estimation caused by low genetic diversity.

Phylogenetic meta-analysis of persistent SARS-CoV-2 infections in immunocompromised individuals highlights the challenges of robust evolutionary rate estimation caused by low genetic diversity.

Journal: Virus evolution

Published: February 27, 2025

Leveraging mobility data to analyze persistent SARS-CoV-2 mutations and inform targeted genomic surveillance.

Leveraging mobility data to analyze persistent SARS-CoV-2 mutations and inform targeted genomic surveillance.

Journal: eLife

Published: January 15, 2025

Fast hospital discharge rates blur within-hospital 'transmission footprint' in bacterial genomes, as showcased with Staphylococcus aureus.

Fast hospital discharge rates blur within-hospital 'transmission footprint' in bacterial genomes, as showcased with Staphylococcus aureus.

Journal: PLoS computational biology

Published: December 02, 2024

The Way Forward to Embrace Artificial Intelligence in Public Health.

The Way Forward to Embrace Artificial Intelligence in Public Health.

Journal: American journal of public health

Published: November 21, 2024

Differential sampling for genetic analyses of Treponema pallidum and for radiocarbon dating in archaeological bone.

Differential sampling for genetic analyses of Treponema pallidum and for radiocarbon dating in archaeological bone.

Journal: International journal of paleopathology

Published: September 17, 2024

Showing 1-12 of 61

Last Updated: 09/26/2026