Diogo B. Lima

Berlin, BE, Germany

Last Updated: 09/26/2026

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Found 32 publications

Q2C: A software for managing mass spectrometry facilities.

Q2C: A software for managing mass spectrometry facilities.

Journal: Journal of proteomics

Published: May 22, 2025

Structural dynamics of the TPS/TPP complex in Saccharomyces cerevisiae: Insights from cross-linking mass spectrometry and computational modeling.

Structural dynamics of the TPS/TPP complex in Saccharomyces cerevisiae: Insights from cross-linking mass spectrometry and computational modeling.

Journal: Journal of proteomics

Published: January 14, 2025

RawVegetable 2.0: Refining XL-MS Data Acquisition through Enhanced Quality Control.

RawVegetable 2.0: Refining XL-MS Data Acquisition through Enhanced Quality Control.

Journal: Journal of proteome research

Published: February 01, 2024

Proteome-scale recombinant standards and a robust high-speed search engine to advance cross-linking MS-based interactomics.

Proteome-scale recombinant standards and a robust high-speed search engine to advance cross-linking MS-based interactomics.

Journal: Nature methods

Published: October 23, 2023

PatternLab V Handles Multiplex Spectra in Shotgun Proteomic Searches and Increases Identification.

PatternLab V Handles Multiplex Spectra in Shotgun Proteomic Searches and Increases Identification.

Journal: Journal of the American Society for Mass Spectrometry

Published: March 22, 2023

Cross-link assisted spatial proteomics to map sub-organelle proteomes and membrane protein topologies.

Cross-link assisted spatial proteomics to map sub-organelle proteomes and membrane protein topologies.

Journal: Nature communications

Published: March 04, 2023

DiagnoMass: A proteomics hub for pinpointing discriminative spectral clusters.

DiagnoMass: A proteomics hub for pinpointing discriminative spectral clusters.

Journal: Journal of proteomics

Published: February 07, 2023

Increasing confidence in proteomic spectral deconvolution through mass defect.

Increasing confidence in proteomic spectral deconvolution through mass defect.

Journal: Bioinformatics (Oxford, England)

Published: May 02, 2022

Shigella IpaA mediates actin bundling through diffusible vinculin oligomers with activation imprint.

Shigella IpaA mediates actin bundling through diffusible vinculin oligomers with activation imprint.

Journal: Cell reports

Published: January 03, 2022

Molecular Architecture of the Antiophidic Protein DM64 and its Binding Specificity to Myotoxin II From Bothrops asper Venom.

Molecular Architecture of the Antiophidic Protein DM64 and its Binding Specificity to Myotoxin II From Bothrops asper Venom.

Journal: Frontiers in molecular biosciences

Published: September 30, 2021

Simple, efficient and thorough shotgun proteomic analysis with PatternLab V.

Simple, efficient and thorough shotgun proteomic analysis with PatternLab V.

Journal: Nature protocols

Published: June 14, 2021

Leveraging the partition selection bias to achieve a high-quality clustering of mass spectra.

Leveraging the partition selection bias to achieve a high-quality clustering of mass spectra.

Journal: Journal of proteomics

Published: April 12, 2021

Showing 1-12 of 32

Last Updated: 09/26/2026