Donghui Choe

Daejeon, Republic of Korea

Last Updated: 09/26/2026

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Found 34 publications

Secretin-interacting plug proteins prevent antibiotic influx during type IV pilus assembly in Pseudomonas aeruginosa.

Secretin-interacting plug proteins prevent antibiotic influx during type IV pilus assembly in Pseudomonas aeruginosa.

Journal: Nature communications
Published: March 29, 2026

CRISPRi screening reveals E. coli's anaerobic-like respiratory adaptations to gentamicin: membrane depolarization by CpxR.

CRISPRi screening reveals E. coli's anaerobic-like respiratory adaptations to gentamicin: membrane depolarization by CpxR.

Journal: mSystems
Published: June 16, 2025

Transcriptional regulatory networks of the human gut symbiont Bacteroides thetaiotaomicron are uncovered using machine learning.

Transcriptional regulatory networks of the human gut symbiont Bacteroides thetaiotaomicron are uncovered using machine learning.

Journal: Nucleic acids research
Published: March 08, 2025

Direct mRNA-to-sgRNA conversion generates design-free ultra-dense CRISPRi libraries for systematic phenotypic screening.

Direct mRNA-to-sgRNA conversion generates design-free ultra-dense CRISPRi libraries for systematic phenotypic screening.

Journal: Metabolic engineering
Published: October 26, 2024

Rapid identification of key antibiotic resistance genes in E. coli using high-resolution genome-scale CRISPRi screening.

Rapid identification of key antibiotic resistance genes in E. coli using high-resolution genome-scale CRISPRi screening.

Journal: iScience
Published: September 23, 2024

iModulonDB 2.0: dynamic tools to facilitate knowledge-mining and user-enabled analyses of curated transcriptomic datasets.

iModulonDB 2.0: dynamic tools to facilitate knowledge-mining and user-enabled analyses of curated transcriptomic datasets.

Journal: Nucleic acids research
Published: August 26, 2024

A live bacteria enzyme assay for identification of human disease mutations and drug screening.

A live bacteria enzyme assay for identification of human disease mutations and drug screening.

Journal: Nature biomedical engineering
Published: May 24, 2024

Machine-Learning Analysis of Streptomyces coelicolor Transcriptomes Reveals a Transcription Regulatory Network Encompassing Biosynthetic Gene Clusters.

Machine-Learning Analysis of Streptomyces coelicolor Transcriptomes Reveals a Transcription Regulatory Network Encompassing Biosynthetic Gene Clusters.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)
Published: April 13, 2024

Serial adaptive laboratory evolution enhances mixed carbon metabolic capacity of Escherichia coli.

Serial adaptive laboratory evolution enhances mixed carbon metabolic capacity of Escherichia coli.

Journal: Metabolic engineering
Published: January 12, 2024

Advancing the scale of synthetic biology via cross-species transfer of cellular functions enabled by iModulon engraftment.

Advancing the scale of synthetic biology via cross-species transfer of cellular functions enabled by iModulon engraftment.

Journal: Nature communications
Published: December 30, 2023

Reduction-to-synthesis: the dominant approach to genome-scale synthetic biology.

Reduction-to-synthesis: the dominant approach to genome-scale synthetic biology.

Journal: Trends in biotechnology
Published: December 14, 2023

Revealing Causes for False-Positive and False-Negative Calling of Gene Essentiality in Escherichia coli Using Transposon Insertion Sequencing.

Revealing Causes for False-Positive and False-Negative Calling of Gene Essentiality in Escherichia coli Using Transposon Insertion Sequencing.

Journal: mSystems
Published: December 12, 2022
Showing 1-12 of 34

Last Updated: 09/26/2026