Filip Stefaniak

Warsaw, MZ 02109, Poland

Last Updated: 09/26/2026

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Found 23 publications

Prediction of Ligand Binding to Transthyretin Using Machine Learning Algorithms and Low-Dimensional Molecular Descriptors: A Tox24 Challenge Study.

Prediction of Ligand Binding to Transthyretin Using Machine Learning Algorithms and Low-Dimensional Molecular Descriptors: A Tox24 Challenge Study.

Journal: Chemical research in toxicology
Published: June 01, 2026

MODOMICS: a database of RNA modifications and related information. 2025 update and 20th anniversary.

MODOMICS: a database of RNA modifications and related information. 2025 update and 20th anniversary.

Journal: Nucleic acids research
Published: September 24, 2025

Evaluation of single-template ligand-based methods for the discovery of small-molecule nucleic acid binders.

Evaluation of single-template ligand-based methods for the discovery of small-molecule nucleic acid binders.

Journal: Briefings in bioinformatics
Published: July 29, 2025

SimRNAweb v2.0: a web server for RNA folding simulations and 3D structure modeling, with optional restraints and enhanced analysis of folding trajectories.

SimRNAweb v2.0: a web server for RNA folding simulations and 3D structure modeling, with optional restraints and enhanced analysis of folding trajectories.

Journal: Nucleic acids research
Published: February 28, 2024

RNA-Puzzles Round V: blind predictions of 23 RNA structures.

RNA-Puzzles Round V: blind predictions of 23 RNA structures.

Journal: Nature methods
Published: February 15, 2024

DEGRONOPEDIA: a web server for proteome-wide inspection of degrons.

DEGRONOPEDIA: a web server for proteome-wide inspection of degrons.

Journal: Nucleic acids research
Published: February 02, 2024

MODOMICS: a database of RNA modifications and related information. 2023 update.

MODOMICS: a database of RNA modifications and related information. 2023 update.

Journal: Nucleic acids research
Published: September 22, 2023

RNA tertiary structure prediction in CASP15 by the GeneSilico group: Folding simulations based on statistical potentials and spatial restraints.

RNA tertiary structure prediction in CASP15 by the GeneSilico group: Folding simulations based on statistical potentials and spatial restraints.

Journal: Proteins
Published: April 15, 2023

Structural interaction fingerprints and machine learning for predicting and explaining binding of small molecule ligands to RNA.

Structural interaction fingerprints and machine learning for predicting and explaining binding of small molecule ligands to RNA.

Journal: Briefings in bioinformatics
Published: December 27, 2022

Design, Synthesis, and Development of pyrazolo[1,5-a]pyrimidine Derivatives as a Novel Series of Selective PI3Kδ Inhibitors: Part I-Indole Derivatives.

Design, Synthesis, and Development of pyrazolo[1,5-a]pyrimidine Derivatives as a Novel Series of Selective PI3Kδ Inhibitors: Part I-Indole Derivatives.

Journal: Pharmaceuticals (Basel, Switzerland)
Published: June 22, 2022

fingeRNAt-A novel tool for high-throughput analysis of nucleic acid-ligand interactions.

fingeRNAt-A novel tool for high-throughput analysis of nucleic acid-ligand interactions.

Journal: PLoS computational biology
Published: December 23, 2021

MODOMICS: a database of RNA modification pathways. 2021 update.

MODOMICS: a database of RNA modification pathways. 2021 update.

Journal: Nucleic acids research
Published: September 29, 2021
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Last Updated: 09/26/2026