James C. Kavanagh
Oxford, ENG, United Kingdom
Last Updated: 09/26/2026
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Found 20 publications
Author Correction: The plasmidome associated with Gram-negative bloodstream infections: a large-scale observational study using complete plasmid assemblies.
Journal: Nature communications
Published: April 09, 2024
Target enrichment improves culture-independent detection of Neisseria gonorrhoeae and antimicrobial resistance determinants direct from clinical samples with Nanopore sequencing.
Journal: Microbial genomics
Published: March 26, 2024
Enterobacterales plasmid sharing amongst human bloodstream infections, livestock, wastewater, and waterway niches in Oxfordshire, UK.
Journal: eLife
Published: December 01, 2022
The plasmidome associated with Gram-negative bloodstream infections: A large-scale observational study using complete plasmid assemblies.
Journal: Nature communications
Published: May 12, 2022
Clinical Metagenomic Sequencing for Species Identification and Antimicrobial Resistance Prediction in Orthopedic Device Infection.
Journal: Journal of clinical microbiology
Published: March 31, 2022
Molecular epidemiology and antimicrobial resistance phenotype of paediatric bloodstream infections caused by Gram-negative bacteria.
Journal: Communications medicine
Published: November 11, 2021
Nanopore metagenomic sequencing of influenza virus directly from respiratory samples: diagnosis, drug resistance and nosocomial transmission, United Kingdom, 2018/19 influenza season.
Journal: Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin
Published: July 09, 2021
Ten-year longitudinal molecular epidemiology study of Escherichia coli and Klebsiella species bloodstream infections in Oxfordshire, UK.
Journal: Genome medicine
Published: January 22, 2021
Optimized use of Oxford Nanopore flowcells for hybrid assemblies.
Journal: Microbial genomics
Published: November 11, 2020
SARS-CoV-2 antibody prevalence, titres and neutralising activity in an antenatal cohort, United Kingdom, 14 April to 15 June 2020.
Journal: Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin
Published: October 23, 2020
Genomic network analysis of environmental and livestock F-type plasmid populations.
Journal: The ISME journal
Published: August 21, 2020
Ten Years of Population-Level Genomic Escherichia coli and Klebsiella pneumoniae Serotype Surveillance Informs Vaccine Development for Invasive Infections.
Journal: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Published: August 21, 2020
Last Updated: 09/26/2026