James S. Nagai

Aachen, NW, Germany

Last Updated: 09/26/2026

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Found 29 publications

Wnt-dependent spatiotemporal reprogramming of bone marrow niches drives fibrosis.

Wnt-dependent spatiotemporal reprogramming of bone marrow niches drives fibrosis.

Journal: HemaSphere
Published: December 05, 2025

PILOT-GM-VAE: patient-level analysis of single-cell disease atlas with optimal transport of Gaussian mixture variational autoencoders.

PILOT-GM-VAE: patient-level analysis of single-cell disease atlas with optimal transport of Gaussian mixture variational autoencoders.

Journal: Briefings in bioinformatics
Published: April 02, 2025

Advances and challenges in cell-cell communication inference: a comprehensive review of tools, resources, and future directions.

Advances and challenges in cell-cell communication inference: a comprehensive review of tools, resources, and future directions.

Journal: Briefings in bioinformatics
Published: February 27, 2025

An oncogenic KRAS-driven secretome involving TNFα promotes niche preparation prior to pancreatic cancer onset.

An oncogenic KRAS-driven secretome involving TNFα promotes niche preparation prior to pancreatic cancer onset.

Journal: Molecular cancer
Published: February 21, 2025

Salmonella infection accelerates postnatal maturation of the intestinal epithelium.

Salmonella infection accelerates postnatal maturation of the intestinal epithelium.

Journal: Proceedings of the National Academy of Sciences of the United States of America
Published: January 10, 2025

PHLOWER leverages single-cell multimodal data to infer complex, multi-branching cell differentiation trajectories.

PHLOWER leverages single-cell multimodal data to infer complex, multi-branching cell differentiation trajectories.

Journal: Nature methods
Published: September 30, 2024

Inhibiting the alarmin-driven hematopoiesis-stromal cell crosstalk in primary myelofibrosis ameliorates bone marrow fibrosis.

Inhibiting the alarmin-driven hematopoiesis-stromal cell crosstalk in primary myelofibrosis ameliorates bone marrow fibrosis.

Journal: HemaSphere
Published: September 10, 2024

scACCorDiON: a clustering approach for explainable patient level cell-cell communication graph analysis.

scACCorDiON: a clustering approach for explainable patient level cell-cell communication graph analysis.

Journal: Bioinformatics (Oxford, England)
Published: August 07, 2024

Correction: A stomata classification and detection system in microscope images of maize cultivars.

Correction: A stomata classification and detection system in microscope images of maize cultivars.

Journal: PloS one
Published: January 02, 2024

Mapping cardiac remodeling in chronic kidney disease.

Mapping cardiac remodeling in chronic kidney disease.

Journal: Science advances
Published: November 24, 2023

Enhanced fatty acid oxidation through metformin and baicalin as therapy for COVID-19 and associated inflammatory states in lung and kidney.

Enhanced fatty acid oxidation through metformin and baicalin as therapy for COVID-19 and associated inflammatory states in lung and kidney.

Journal: Redox biology
Published: September 25, 2023

Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT).

Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT).

Journal: Molecular systems biology
Published: August 24, 2023
Showing 1-12 of 29

Last Updated: 09/26/2026