Jani Halkilahti

Helsinki, Finland

Last Updated: 09/26/2026

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Found 13 publications

Detecting plasmid-mediated dissemination of bla KPC-3 and bla OXA-48-like genes in Enterobacterales across Finnish healthcare organizations using hybrid genome assembly.

Detecting plasmid-mediated dissemination of bla KPC-3 and bla OXA-48-like genes in Enterobacterales across Finnish healthcare organizations using hybrid genome assembly.

Journal: Frontiers in microbiology
Published: January 28, 2025

Detection of SARS-COV-2 variants and their proportions in wastewater samples using next-generation sequencing in Finland.

Detection of SARS-COV-2 variants and their proportions in wastewater samples using next-generation sequencing in Finland.

Journal: Scientific reports
Published: November 26, 2023

Comparative Genomics of Shiga Toxin-Producing Escherichia coli Strains Isolated from Pediatric Patients with and without Hemolytic Uremic Syndrome from 2000 to 2016 in Finland.

Comparative Genomics of Shiga Toxin-Producing Escherichia coli Strains Isolated from Pediatric Patients with and without Hemolytic Uremic Syndrome from 2000 to 2016 in Finland.

Journal: Microbiology spectrum
Published: June 22, 2022

Incidence Trends for SARS-CoV-2 Alpha and Beta Variants, Finland, Spring 2021.

Incidence Trends for SARS-CoV-2 Alpha and Beta Variants, Finland, Spring 2021.

Journal: Emerging infectious diseases
Published: October 28, 2021

Hemolytic uremic syndrome caused by Shiga toxin-producing Escherichia coli in children: incidence, risk factors, and clinical outcome.

Hemolytic uremic syndrome caused by Shiga toxin-producing Escherichia coli in children: incidence, risk factors, and clinical outcome.

Journal: Pediatric nephrology (Berlin, Germany)
Published: October 11, 2019

Shopping Detail Information and Home Freezer Sampling Confirmed the Role of Commercial, Modified-Atmosphere Packaged Meatballs as a Vehicle for Listeriosis in Finland.

Shopping Detail Information and Home Freezer Sampling Confirmed the Role of Commercial, Modified-Atmosphere Packaged Meatballs as a Vehicle for Listeriosis in Finland.

Journal: Frontiers in public health
Published: March 08, 2019

Semen as a source of Mycoplasma bovis mastitis in dairy herds.

Semen as a source of Mycoplasma bovis mastitis in dairy herds.

Journal: Veterinary microbiology
Published: January 04, 2018

Rare Detection of the Acinetobacter Class D Carbapenemase blaOXA-23 Gene in Proteus mirabilis.

Rare Detection of the Acinetobacter Class D Carbapenemase blaOXA-23 Gene in Proteus mirabilis.

Journal: Antimicrobial agents and chemotherapy
Published: February 24, 2016

Characterization of Shigella sonnei Isolate Carrying Shiga Toxin 2-Producing Gene.

Characterization of Shigella sonnei Isolate Carrying Shiga Toxin 2-Producing Gene.

Journal: Emerging infectious diseases
Published: April 22, 2015

Comparative Genomics and Characterization of Hybrid Shigatoxigenic and Enterotoxigenic Escherichia coli (STEC/ETEC) Strains.

Comparative Genomics and Characterization of Hybrid Shigatoxigenic and Enterotoxigenic Escherichia coli (STEC/ETEC) Strains.

Journal: PloS one
Published: February 14, 2015

Refinement of whole-genome multilocus sequence typing analysis by addressing gene paralogy.

Refinement of whole-genome multilocus sequence typing analysis by addressing gene paralogy.

Journal: Journal of clinical microbiology
Published: January 07, 2015

Characterization of Salmonella Typhimurium isolates from domestically acquired infections in Finland by phage typing, antimicrobial susceptibility testing, PFGE and MLVA.

Characterization of Salmonella Typhimurium isolates from domestically acquired infections in Finland by phage typing, antimicrobial susceptibility testing, PFGE and MLVA.

Journal: BMC microbiology
Published: December 10, 2014
Showing 1-12 of 13

Last Updated: 09/26/2026