Jean-christophe C. Marin-Olivo - Publications

Protocol to quantify glioblastoma cell invasion and nuclear deformations in 3D hydrogels.

Journal: STAR protocols

Published: March 11, 2026

Segmentation of renal tubules and automatic biomarker quantification in ciliopathy preclinical models.

Journal: Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference

Published: December 03, 2025

SAMJ: fast image annotation on ImageJ/Fiji via segment anything model.

Journal: Nature communications

Published: June 19, 2025

Estimation of Stiffness Maps in Deforming Cells Through Optical Flow With Bounded Curvature.

Journal: IEEE transactions on medical imaging

Published: November 08, 2024

Three-dimensional cell culture conditions promoted the Mesenchymal-Amoeboid Transition in the Triple-Negative Breast Cancer cell line MDA-MB-231.

Journal: Frontiers in cell and developmental biology

Published: May 20, 2024

Fibronectin induces a transition from amoeboid to a fan morphology and modifies migration in Entamoeba histolytica.

Journal: PLoS pathogens

Published: February 09, 2024

Intermediate filaments promote glioblastoma cell invasion by controlling nuclear deformations and mechanosensitive expression of MMP14.

Journal: Cell reports

Published: January 17, 2024

JDLL: a library to run deep learning models on Java bioimage informatics platforms.

Journal: Nature methods

Published: January 09, 2024

Bridging the gap: Integrating cutting-edge techniques into biological imaging with deepImageJ.

Journal: Biological imaging

Published: December 31, 2023

Statistical analysis of spatial patterns in tumor microenvironment images.

Journal: Nature communications

Published: November 22, 2023

Automatic monitoring of whole-body neural activity in behaving Hydra.

Journal: bioRxiv : the preprint server for biology

Published: October 04, 2023

Automatic monitoring of neural activity with single-cell resolution in behaving Hydra.

Journal: Scientific reports

Published: September 25, 2023