Joao A. Carrico

Joao A. Carrico

Linda-a-velha, 2795197, Portugal

Last Updated: 09/26/2026

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Found 52 publications

chewBBACA 3: lowering the barrier for scalable and detailed whole- and core-genome multilocus sequence typing.

chewBBACA 3: lowering the barrier for scalable and detailed whole- and core-genome multilocus sequence typing.

Journal: Genome medicine

Published: April 29, 2025

Validation of Core and Whole-Genome Multi-Locus Sequence Typing Schemes for Shiga-Toxin-Producing E. coli (STEC) Outbreak Detection in a National Surveillance Network, PulseNet 2.0, USA.

Validation of Core and Whole-Genome Multi-Locus Sequence Typing Schemes for Shiga-Toxin-Producing E. coli (STEC) Outbreak Detection in a National Surveillance Network, PulseNet 2.0, USA.

Journal: Microorganisms

Published: April 17, 2025

Genomic insights into the expansion of carbapenem-resistant Klebsiella pneumoniae within Portuguese hospitals.

Genomic insights into the expansion of carbapenem-resistant Klebsiella pneumoniae within Portuguese hospitals.

Journal: The Journal of hospital infection

Published: October 19, 2023

Polymerase chain reaction for the in vitro detection of the pESI plasmid associated with the globally circulating Salmonella Infantis outbreak strain.

Polymerase chain reaction for the in vitro detection of the pESI plasmid associated with the globally circulating Salmonella Infantis outbreak strain.

Journal: Letters in applied microbiology

Published: April 28, 2023

Spontaneous Genomic Variation as a Survival Strategy of Nosocomial Staphylococcus haemolyticus.

Spontaneous Genomic Variation as a Survival Strategy of Nosocomial Staphylococcus haemolyticus.

Journal: Microbiology spectrum

Published: March 06, 2023

LMAS: evaluating metagenomic short de novo assembly methods through defined communities.

LMAS: evaluating metagenomic short de novo assembly methods through defined communities.

Journal: GigaScience

Published: May 04, 2022

Highly Specific Blood-Brain Barrier Transmigrating Single-Domain Antibodies Selected by an In Vivo Phage Display Screening.

Highly Specific Blood-Brain Barrier Transmigrating Single-Domain Antibodies Selected by an In Vivo Phage Display Screening.

Journal: Pharmaceutics

Published: August 06, 2021

Genome analysis of Legionella pneumophila ST23 from various countries reveals highly similar strains.

Genome analysis of Legionella pneumophila ST23 from various countries reveals highly similar strains.

Journal: Life science alliance

Published: May 11, 2021

Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas.

Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas.

Journal: Nucleic acids research

Published: August 07, 2020

Two multi-fragment recombination events resulted in the β-lactam-resistant serotype 11A-ST6521 related to Spain9V-ST156 pneumococcal clone spreading in south-western Europe, 2008 to 2016.

Two multi-fragment recombination events resulted in the β-lactam-resistant serotype 11A-ST6521 related to Spain9V-ST156 pneumococcal clone spreading in south-western Europe, 2008 to 2016.

Journal: Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin

Published: April 30, 2020

DEN-IM: dengue virus genotyping from amplicon and shotgun metagenomic sequencing.

DEN-IM: dengue virus genotyping from amplicon and shotgun metagenomic sequencing.

Journal: Microbial genomics

Published: March 06, 2020

Distance-based phylogenetic inference from typing data: a unifying view.

Distance-based phylogenetic inference from typing data: a unifying view.

Journal: Briefings in bioinformatics

Published: February 10, 2020

Showing 1-12 of 52

Last Updated: 09/26/2026