Johannes Soding
Goettingen, NI 37077, Germany
Last Updated: 09/26/2026
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Found 69 publications
PMGen: from peptide-MHC structure prediction to peptide generation.
Journal: Bioinformatics (Oxford, England)
Published: March 16, 2026
Phylograd: fast column-specific calculation of substitution model gradients.
Journal: BMC bioinformatics
Published: September 04, 2025
Aggregation in gut: on the link between neurodegeneration and bacterial functional amyloids.
Journal: NPJ biofilms and microbiomes
Published: June 09, 2025
Enhancing genome recovery across metagenomic samples using MAGmax.
Journal: Bioinformatics (Oxford, England)
Published: May 28, 2025
Evaluation of metagenome binning: advances and challenges.
Journal: Briefings in bioinformatics
Published: March 31, 2025
De novo discovery of conserved gene clusters in microbial genomes with Spacedust.
Journal: Nature methods
Published: October 02, 2024
CarpeDeam: a de novo metagenome assembler for heavily damaged ancient datasets.
Journal: Genome biology
Published: August 12, 2024
Rapid and sensitive protein complex alignment with Foldseek-Multimer.
Journal: Nature methods
Published: May 13, 2024
Strain-resolved de-novo metagenomic assembly of viral genomes and microbial 16S rRNAs.
Journal: Microbiome
Published: April 29, 2024
TransAnnot-a fast transcriptome annotation pipeline.
Journal: Bioinformatics advances
Published: September 26, 2023
DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options.
Journal: Nucleic acids research
Published: September 14, 2023
Cooperativity boosts affinity and specificity of proteins with multiple RNA-binding domains.
Journal: NAR genomics and bioinformatics
Published: January 04, 2023
Last Updated: 09/26/2026