Julio Vides-Collado
Cuernavaca, MOR, Mexico
Last Updated: 09/26/2026
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Found 49 publications
Fine-tuned GPT-based foundation models effectively reconstruct bacterial transcriptional regulatory networks from literature.
Journal: Frontiers in artificial intelligence
Published: January 15, 2026
The allostery principle supports the symbolic character of signaling circuits: gene regulation provides a form of intelligence to living systems.
Journal: Theory in biosciences = Theorie in den Biowissenschaften
Published: November 27, 2024
A Cryptic Prophage Transcription Factor Drives Phenotypic Changes via Host Gene Regulation.
Journal: bioRxiv : the preprint server for biology
Published: September 30, 2024
Predictive Biophysical Neural Network Modeling of a Compendium of in vivo Transcription Factor DNA Binding Profiles for Escherichia coli.
Journal: bioRxiv : the preprint server for biology
Published: June 03, 2024
Predictive biophysical neural network modeling of a compendium of in vivo transcription factor DNA binding profiles for Escherichia coli.
Journal: Nature communications
Published: April 19, 2024
Flexible gold standards for transcription factor regulatory interactions in Escherichia coli K-12: architecture of evidence types.
Journal: Frontiers in genetics
Published: December 10, 2023
RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12.
Journal: Nucleic acids research
Published: September 15, 2023
A Gold Standard for Transcription Factor Regulatory Interactions in Escherichia coli K-12: Architecture of Evidence Types.
Journal: bioRxiv : the preprint server for biology
Published: May 10, 2023
Regulatory promoter architectures in the hands of thermodynamic modelling.
Journal: Nature reviews. Genetics
Published: February 06, 2023
Last Updated: 09/26/2026