Ko Abe
Tokyo, Japan
Last Updated: 09/26/2026
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Found 14 publications
mmVelo: A deep generative model for estimating cell state-dependent dynamics across multiple modalities.
Journal: Bioinformatics (Oxford, England)
Published: November 19, 2025
scSurv: a deep generative model for single-cell survival analysis.
Journal: Bioinformatics (Oxford, England)
Published: April 09, 2025
LineageVAE: reconstructing historical cell states and transcriptomes toward unobserved progenitors.
Journal: Bioinformatics (Oxford, England)
Published: April 19, 2024
Survivability and life support in sealed mini-ecosystems with simulated planetary soils.
Journal: Scientific reports
Published: March 04, 2024
DeepKINET: a deep generative model for estimating single-cell RNA splicing and degradation rates.
Journal: Genome biology
Published: December 14, 2023
UNMF: a unified nonnegative matrix factorization for multi-dimensional omics data.
Journal: Briefings in bioinformatics
Published: February 21, 2023
A mixture-of-experts deep generative model for integrated analysis of single-cell multiomics data.
Journal: Cell reports methods
Published: March 15, 2021
An analysis modality for vascular structures combining tissue-clearing technology and topological data analysis.
Journal: Nature communications
Published: February 20, 2021
Model-based clustering for flow and mass cytometry data with clinical information.
Journal: BMC bioinformatics
Published: September 17, 2020
CYBERTRACK2.0: zero-inflated model-based cell clustering and population tracking method for longitudinal mass cytometry data.
Journal: Bioinformatics (Oxford, England)
Published: March 24, 2020
Model-based cell clustering and population tracking for time-series flow cytometry data.
Journal: BMC bioinformatics
Published: December 29, 2019
Last Updated: 09/26/2026