Lauren A. Cowley

Bath, ENG BA27AY, United Kingdom

Last Updated: 09/26/2026

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Found 31 publications

Predicting clinical outcome of Escherichia coli O157:H7 infections using explainable machine learning.

Predicting clinical outcome of Escherichia coli O157:H7 infections using explainable machine learning.

Journal: Microbial genomics
Published: December 17, 2025

GWarrange: a pre- and post- genome-wide association studies pipeline for detecting phenotype-associated genome rearrangement events.

GWarrange: a pre- and post- genome-wide association studies pipeline for detecting phenotype-associated genome rearrangement events.

Journal: Microbial genomics
Published: July 09, 2024

Genome-wide annotation of transcript boundaries using bacterial Rend-seq datasets.

Genome-wide annotation of transcript boundaries using bacterial Rend-seq datasets.

Journal: Microbial genomics
Published: April 26, 2024

Convergence and global molecular epidemiology of Klebsiella pneumoniae plasmids harbouring the iuc3 virulence locus: a population genomic analysis.

Convergence and global molecular epidemiology of Klebsiella pneumoniae plasmids harbouring the iuc3 virulence locus: a population genomic analysis.

Journal: The Lancet. Microbe
Published: February 20, 2024

Author Correction: The evolution and international spread of extensively drug resistant Shigella sonnei.

Author Correction: The evolution and international spread of extensively drug resistant Shigella sonnei.

Journal: Nature communications
Published: April 21, 2023

Rapid geographical source attribution of Salmonella enterica serovar Enteritidis genomes using hierarchical machine learning.

Rapid geographical source attribution of Salmonella enterica serovar Enteritidis genomes using hierarchical machine learning.

Journal: eLife
Published: October 13, 2022

The evolution and international spread of extensively drug resistant Shigella sonnei.

The evolution and international spread of extensively drug resistant Shigella sonnei.

Journal: Nature communications
Published: September 12, 2022

The acquisition of clinically relevant amoxicillin resistance in Streptococcus pneumoniae requires ordered horizontal gene transfer of four loci.

The acquisition of clinically relevant amoxicillin resistance in Streptococcus pneumoniae requires ordered horizontal gene transfer of four loci.

Journal: PLoS pathogens
Published: May 04, 2022

Transposable Element Insertions into the Escherichia coli Polysialic Acid Gene Cluster Result in Resistance to the K1F Bacteriophage.

Transposable Element Insertions into the Escherichia coli Polysialic Acid Gene Cluster Result in Resistance to the K1F Bacteriophage.

Journal: Microbiology spectrum
Published: April 25, 2022

Acquisition and loss of CTX-M plasmids in Shigella species associated with MSM transmission in the UK.

Acquisition and loss of CTX-M plasmids in Shigella species associated with MSM transmission in the UK.

Journal: Microbial genomics
Published: August 24, 2021

Genomics, social media and mobile phone data enable mapping of SARS-CoV-2 lineages to inform health policy in Bangladesh.

Genomics, social media and mobile phone data enable mapping of SARS-CoV-2 lineages to inform health policy in Bangladesh.

Journal: Nature microbiology
Published: January 18, 2021

Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing.

Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing.

Journal: Nature microbiology
Published: August 06, 2019
Showing 1-12 of 31

Last Updated: 09/26/2026