Mikael J. Boden

Cooper Road
QLD 4072, Australia

Last Updated: 09/26/2026

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Found 76 publications

Squidly harnesses enzyme functional hierarchy and contrastive learning to efficiently predict catalytic residues from sequence.

Squidly harnesses enzyme functional hierarchy and contrastive learning to efficiently predict catalytic residues from sequence.

Journal: eLife

Published: September 04, 2026

TRIAGE Toolkit: Streamlined Discovery of Regulatory Genes and Elements.

TRIAGE Toolkit: Streamlined Discovery of Regulatory Genes and Elements.

Journal: Current protocols

Published: July 01, 2026

Ancestral Protein Reconstruction Uncovers a Thermotolerant Rieske Oxygenase with Enhanced O-Demethylation Activity toward 3-O-Methylgallate.

Ancestral Protein Reconstruction Uncovers a Thermotolerant Rieske Oxygenase with Enhanced O-Demethylation Activity toward 3-O-Methylgallate.

Journal: ACS synthetic biology

Published: June 03, 2026

Investigation of Substrate Specificity in 5-Keto-4-Deoxy-Glucarate Dehydratase and 2-Keto-3-Deoxy-L-Arabinonate Dehydratase.

Investigation of Substrate Specificity in 5-Keto-4-Deoxy-Glucarate Dehydratase and 2-Keto-3-Deoxy-L-Arabinonate Dehydratase.

Journal: Chembiochem : a European journal of chemical biology

Published: May 27, 2026

A methionine-lined active site governs carbocation stabilization and product specificity in a bacterial terpene synthase.

A methionine-lined active site governs carbocation stabilization and product specificity in a bacterial terpene synthase.

Journal: FEBS letters

Published: February 15, 2026

Comprehensive molecular impact mapping of common and rare variants at GWAS loci.

Comprehensive molecular impact mapping of common and rare variants at GWAS loci.

Journal: bioRxiv : the preprint server for biology

Published: June 12, 2025

Conserved facultative heterochromatin across cell types identify regulatory sequences underpinning cell identity and disease.

Conserved facultative heterochromatin across cell types identify regulatory sequences underpinning cell identity and disease.

Journal: Nucleic acids research

Published: March 13, 2025

Thermostable ancestors enabled evolutionary diversification of promiscuous chemical defence enzymes.

Thermostable ancestors enabled evolutionary diversification of promiscuous chemical defence enzymes.

Journal: The EMBO journal

Published: February 06, 2025

Learning the language of phylogeny with MSA Transformer.

Learning the language of phylogeny with MSA Transformer.

Journal: Cell systems

Published: December 27, 2024

Complete structures of the YenTc holotoxin prepore and pore reveal the evolutionary basis for chitinase incorporation into ABC toxins.

Complete structures of the YenTc holotoxin prepore and pore reveal the evolutionary basis for chitinase incorporation into ABC toxins.

Journal: Nature communications

Published: November 05, 2024

Do protein language models learn phylogeny?

Do protein language models learn phylogeny?

Journal: Briefings in bioinformatics

Published: September 24, 2024

TRIAGE: an R package for regulatory gene analysis.

TRIAGE: an R package for regulatory gene analysis.

Journal: Briefings in bioinformatics

Published: September 11, 2024

Showing 1-12 of 76

Last Updated: 09/26/2026