Mohammed Alser
Zurich, ZH, Switzerland
Last Updated: 09/26/2026
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Found 22 publications
Special Issue: 13th International Conference on Computational Advances in Bio and Medical Sciences.
Journal: Journal of computational biology : a journal of computational molecular cell biology
Published: May 13, 2026
Robust software development practices improve citations of RNA-seq tools.
Journal: bioRxiv : the preprint server for biology
Published: September 18, 2025
Assessing genomic reproducibility of read alignment tools.
Journal: bioRxiv : the preprint server for biology
Published: June 04, 2025
AirLift: A Fast and Comprehensive Technique for Remapping Alignments Between Reference Genomes.
Journal: IEEE transactions on computational biology and bioinformatics
Published: August 19, 2024
RUBICON: a framework for designing efficient deep learning-based genomic basecallers.
Journal: Genome biology
Published: April 24, 2023
Taming large-scale genomic analyses via sparsified genomics.
Journal: Nature communications
Published: January 19, 2023
Scrooge: a fast and memory-frugal genomic sequence aligner for CPUs, GPUs, and ASICs.
Journal: Bioinformatics (Oxford, England)
Published: August 21, 2022
A framework for high-throughput sequence alignment using real processing-in-memory systems.
Journal: Bioinformatics (Oxford, England)
Published: August 03, 2022
BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis.
Journal: NAR genomics and bioinformatics
Published: July 29, 2022
Packaging and containerization of computational methods.
Journal: Nature protocols
Published: June 29, 2022
From molecules to genomic variations: Accelerating genome analysis via intelligent algorithms and architectures.
Journal: Computational and structural biotechnology journal
Published: May 12, 2022
Last Updated: 09/26/2026