Nicola Calonaci

Trieste, Italy

Last Updated: 09/26/2026

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Found 15 publications

Gene mutant dosage is associated with prognosis and metastatic tropism in 60,000 clinical cancer samples.

Gene mutant dosage is associated with prognosis and metastatic tropism in 60,000 clinical cancer samples.

Journal: medRxiv : the preprint server for health sciences
Published: May 25, 2026

Clinical significance of EGFR amplification in patients with EGFR-mutated metastatic non-small cell lung cancer receiving first-line osimertinib.

Clinical significance of EGFR amplification in patients with EGFR-mutated metastatic non-small cell lung cancer receiving first-line osimertinib.

Journal: Clinical cancer research : an official journal of the American Association for Cancer Research
Published: March 06, 2026

Platinum-based neoadjuvant chemotherapy and the predictive role of DNA damage response biomarkers in TNBC: the NeoCarbo study.

Platinum-based neoadjuvant chemotherapy and the predictive role of DNA damage response biomarkers in TNBC: the NeoCarbo study.

Journal: NPJ breast cancer
Published: January 23, 2026

An alignment-free strategy for circulating tumor DNA detection and tumor fraction estimation from whole-genome sequencing data.

An alignment-free strategy for circulating tumor DNA detection and tumor fraction estimation from whole-genome sequencing data.

Journal: PLoS computational biology
Published: July 24, 2025

Multimodal deep learning for predicting neoadjuvant treatment outcomes in breast cancer: a systematic review.

Multimodal deep learning for predicting neoadjuvant treatment outcomes in breast cancer: a systematic review.

Journal: Biology direct
Published: May 02, 2025

DNA methyltransferase 3A (DNMT3A) mutations and PD-(L)1 blockade efficacy in non-small-cell lung cancer.

DNA methyltransferase 3A (DNMT3A) mutations and PD-(L)1 blockade efficacy in non-small-cell lung cancer.

Journal: Annals of oncology : official journal of the European Society for Medical Oncology
Published: December 03, 2024

BASCULE: bayesian inference and clustering of mutational signatures leveraging biological priors.

BASCULE: bayesian inference and clustering of mutational signatures leveraging biological priors.

Journal: Genome biology
Published: September 08, 2024

Gene mutant dosage is associated with prognosis and metastatic tropism in 60,000 clinical cancer samples.

Gene mutant dosage is associated with prognosis and metastatic tropism in 60,000 clinical cancer samples.

Journal: Nature genetics
Published: May 16, 2024

A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing.

A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing.

Journal: PLoS computational biology
Published: August 14, 2023

Molecular Dynamics Simulations with Grand-Canonical Reweighting Suggest Cooperativity Effects in RNA Structure Probing Experiments.

Molecular Dynamics Simulations with Grand-Canonical Reweighting Suggest Cooperativity Effects in RNA Structure Probing Experiments.

Journal: Journal of chemical theory and computation
Published: June 08, 2023

Computational validation of clonal and subclonal copy number alterations from bulk tumor sequencing using CNAqc.

Computational validation of clonal and subclonal copy number alterations from bulk tumor sequencing using CNAqc.

Journal: Genome biology
Published: May 02, 2023

Clonal KEAP1 mutations with loss of heterozygosity share reduced immunotherapy efficacy and low immune cell infiltration in lung adenocarcinoma.

Clonal KEAP1 mutations with loss of heterozygosity share reduced immunotherapy efficacy and low immune cell infiltration in lung adenocarcinoma.

Journal: Annals of oncology : official journal of the European Society for Medical Oncology
Published: September 09, 2022
Showing 1-12 of 15

Last Updated: 09/26/2026