Nienke L. Plantinga

Utrecht, UT 3584CX, Netherlands

Last Updated: 09/26/2026

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Found 20 publications

gplasCC: classification and recovery of plasmids from short-read sequencing data for any bacterial species.

gplasCC: classification and recovery of plasmids from short-read sequencing data for any bacterial species.

Journal: NAR genomics and bioinformatics

Published: September 26, 2025

Impact of selective digestive decontamination on the pangenome composition of ESBL-E. coli.

Impact of selective digestive decontamination on the pangenome composition of ESBL-E. coli.

Journal: The Journal of antimicrobial chemotherapy

Published: August 28, 2025

Characterization of genome-wide transpositions induced by colistin exposure in multi-drug-resistant Klebsiella pneumoniae.

Characterization of genome-wide transpositions induced by colistin exposure in multi-drug-resistant Klebsiella pneumoniae.

Journal: Antimicrobial agents and chemotherapy

Published: May 19, 2025

Healthcare professionals challenged by 14 distinct carbapenemase-producing micro-organisms in a war-injured Ukrainian patient.

Healthcare professionals challenged by 14 distinct carbapenemase-producing micro-organisms in a war-injured Ukrainian patient.

Journal: Infection

Published: October 08, 2024

PlasmidEC and gplas2: an optimized short-read approach to predict and reconstruct antibiotic resistance plasmids in Escherichia coli.

PlasmidEC and gplas2: an optimized short-read approach to predict and reconstruct antibiotic resistance plasmids in Escherichia coli.

Journal: Microbial genomics

Published: February 20, 2024

Integrated surveillance of human respiratory viruses in addition to SARS-CoV-2 in a public testing facility in the Netherlands.

Integrated surveillance of human respiratory viruses in addition to SARS-CoV-2 in a public testing facility in the Netherlands.

Journal: Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology

Published: July 22, 2022

Recovering Escherichia coli Plasmids in the Absence of Long-Read Sequencing Data.

Recovering Escherichia coli Plasmids in the Absence of Long-Read Sequencing Data.

Journal: Microorganisms

Published: July 06, 2021

Less daily oral hygiene is more in the ICU: no.

Less daily oral hygiene is more in the ICU: no.

Journal: Intensive care medicine

Published: December 30, 2020

Bartonella quintana as a cause for prosthetic valve endocarditis and post-sternotomy mediastinitis.

Bartonella quintana as a cause for prosthetic valve endocarditis and post-sternotomy mediastinitis.

Journal: Access microbiology

Published: December 16, 2020

Cost-effectiveness of selective digestive decontamination (SDD) versus selective oropharyngeal decontamination (SOD) in intensive care units with low levels of antimicrobial resistance: an individual patient data meta-analysis.

Cost-effectiveness of selective digestive decontamination (SDD) versus selective oropharyngeal decontamination (SOD) in intensive care units with low levels of antimicrobial resistance: an individual patient data meta-analysis.

Journal: BMJ open

Published: September 09, 2019

Adjusting for Disease Severity Across ICUs in Multicenter Studies.

Adjusting for Disease Severity Across ICUs in Multicenter Studies.

Journal: Critical care medicine

Published: May 29, 2019

The effects of topical antibiotics on eradication and acquisition of third-generation cephalosporin and carbapenem-resistant Gram-negative bacteria in ICU patients; a post hoc analysis from a multicentre cluster-randomized trial.

The effects of topical antibiotics on eradication and acquisition of third-generation cephalosporin and carbapenem-resistant Gram-negative bacteria in ICU patients; a post hoc analysis from a multicentre cluster-randomized trial.

Journal: Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases

Published: May 05, 2019

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Last Updated: 09/26/2026