Niko Beerenwinkel

Basel, BS 4056, Switzerland

Last Updated: 09/26/2026

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Found 219 publications

ECCB 2026: the 25th European Conference on Computational Biology.

ECCB 2026: the 25th European Conference on Computational Biology.

Journal: Bioinformatics (Oxford, England)
Published: August 24, 2026

Corrigendum to "Characterizing Influenza A Virus Lineages and Clinically Relevant Mutations Through High-Coverage Wastewater Sequencing" [Water Research (2025) Article No. 124453].

Corrigendum to "Characterizing Influenza A Virus Lineages and Clinically Relevant Mutations Through High-Coverage Wastewater Sequencing" [Water Research (2025) Article No. 124453].

Journal: Water research
Published: April 05, 2026

Quantifying Uncertainty of Predictions from Cancer Progression Models.

Quantifying Uncertainty of Predictions from Cancer Progression Models.

Journal: Bioinformatics (Oxford, England)
Published: March 05, 2026

A recurrent adaptive mutation in the transmembrane 2B protein of an insect picorna-like virus in a nonnative host.

A recurrent adaptive mutation in the transmembrane 2B protein of an insect picorna-like virus in a nonnative host.

Journal: Journal of virology
Published: December 22, 2025

mhn: a Python package for analyzing cancer progression with Mutual Hazard Networks.

mhn: a Python package for analyzing cancer progression with Mutual Hazard Networks.

Journal: Bioinformatics advances
Published: September 24, 2025

Unifying non-Markovian dynamics and agent heterogeneity in scalable stochastic networks.

Unifying non-Markovian dynamics and agent heterogeneity in scalable stochastic networks.

Journal: Nature communications
Published: September 17, 2025

Learning and forecasting selection dynamics of SARS-CoV-2 variants from wastewater sequencing data using Covvfit.

Learning and forecasting selection dynamics of SARS-CoV-2 variants from wastewater sequencing data using Covvfit.

Journal: Water research
Published: September 16, 2025

Phylogenetic tree inference from single-cell RNA sequencing data with SCITE-RNA.

Phylogenetic tree inference from single-cell RNA sequencing data with SCITE-RNA.

Journal: Genome biology
Published: September 05, 2025

Publisher Correction: Feasibility of multiomics tumor profiling for guiding treatment of melanoma.

Publisher Correction: Feasibility of multiomics tumor profiling for guiding treatment of melanoma.

Journal: Nature medicine
Published: August 01, 2025

Bayesian inference of fitness landscapes via tree-structured branching processes.

Bayesian inference of fitness landscapes via tree-structured branching processes.

Journal: Bioinformatics (Oxford, England)
Published: July 15, 2025

Generalizable machine learning models for rapid antimicrobial resistance prediction in unseen health care settings.

Generalizable machine learning models for rapid antimicrobial resistance prediction in unseen health care settings.

Journal: GigaScience
Published: June 21, 2025

Characterizing influenza A virus lineages and clinically relevant mutations through high-coverage wastewater sequencing.

Characterizing influenza A virus lineages and clinically relevant mutations through high-coverage wastewater sequencing.

Journal: Water research
Published: June 12, 2025
Showing 1-12 of 219

Last Updated: 09/26/2026