Philipp C. Munch

Braunschweig, NI, Germany

Last Updated: 09/26/2026

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Found 29 publications

Enhanced multi-omic viral profiling from microbial community sequencing with BAQLaVa.

Enhanced multi-omic viral profiling from microbial community sequencing with BAQLaVa.

Journal: bioRxiv : the preprint server for biology

Published: February 23, 2026

Comparative assessment of large language models for microbial phenotype assignment.

Comparative assessment of large language models for microbial phenotype assignment.

Journal: Genome biology

Published: January 12, 2026

Author Correction: Optimized model architectures for deep learning on genomic data.

Author Correction: Optimized model architectures for deep learning on genomic data.

Journal: Communications biology

Published: May 23, 2024

Contribution of bacterial and host factors to pathogen "blooming" in a gnotobiotic mouse model for Salmonella enterica serovar Typhimurium-induced enterocolitis.

Contribution of bacterial and host factors to pathogen "blooming" in a gnotobiotic mouse model for Salmonella enterica serovar Typhimurium-induced enterocolitis.

Journal: Infection and immunity

Published: January 08, 2024

Assessing computational predictions of antimicrobial resistance phenotypes from microbial genomes.

Assessing computational predictions of antimicrobial resistance phenotypes from microbial genomes.

Journal: Briefings in bioinformatics

Published: November 10, 2023

A self-supervised deep learning method for data-efficient training in genomics.

A self-supervised deep learning method for data-efficient training in genomics.

Journal: Communications biology

Published: February 08, 2023

Optimized model architectures for deep learning on genomic data.

Optimized model architectures for deep learning on genomic data.

Journal: Communications biology

Published: February 08, 2023

Pulsed antibiotic treatments of gnotobiotic mice manifest in complex bacterial community dynamics and resistance effects.

Pulsed antibiotic treatments of gnotobiotic mice manifest in complex bacterial community dynamics and resistance effects.

Journal: Cell host & microbe

Published: June 28, 2022

Strain Identification and Quantitative Analysis in Microbial Communities.

Strain Identification and Quantitative Analysis in Microbial Communities.

Journal: Journal of molecular biology

Published: February 01, 2022

Rapid and accurate identification of ribosomal RNA sequences via deep learning.

Rapid and accurate identification of ribosomal RNA sequences via deep learning.

Journal: Nucleic acids research

Published: March 15, 2021

In vitro interaction network of a synthetic gut bacterial community.

In vitro interaction network of a synthetic gut bacterial community.

Journal: The ISME journal

Published: February 26, 2021

Evolutionary Stabilization of Cooperative Toxin Production through a Bacterium-Plasmid-Phage Interplay.

Evolutionary Stabilization of Cooperative Toxin Production through a Bacterium-Plasmid-Phage Interplay.

Journal: mBio

Published: July 23, 2020

Showing 1-12 of 29

Last Updated: 09/26/2026