Raphael Kuhn

Basel, BS, Switzerland

Last Updated: 09/26/2026

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Found 13 publications

Dissecting serum polyclonal antibody escape to SARS-CoV-2 variants by deep mutational learning.

Dissecting serum polyclonal antibody escape to SARS-CoV-2 variants by deep mutational learning.

Journal: Cell reports methods

Published: May 19, 2025

Clonally expanded IgG, but not IgA, antibody-secreting cells preferentially target influenza nucleoprotein following homologous and heterologous infections.

Clonally expanded IgG, but not IgA, antibody-secreting cells preferentially target influenza nucleoprotein following homologous and heterologous infections.

Journal: Journal of immunology (Baltimore, Md. : 1950)

Published: January 21, 2025

A novel bioinformatics pipeline for the identification of immune inhibitory receptors as potential therapeutic targets.

A novel bioinformatics pipeline for the identification of immune inhibitory receptors as potential therapeutic targets.

Journal: eLife

Published: October 08, 2024

Evaluating predictive patterns of antigen-specific B cells by single-cell transcriptome and antibody repertoire sequencing.

Evaluating predictive patterns of antigen-specific B cells by single-cell transcriptome and antibody repertoire sequencing.

Journal: Cell systems

Published: June 17, 2024

ePlatypus: an ecosystem for computational analysis of immunogenomics data.

ePlatypus: an ecosystem for computational analysis of immunogenomics data.

Journal: Bioinformatics (Oxford, England)

Published: November 11, 2022

Persistent virus-specific and clonally expanded antibody-secreting cells respond to induced self-antigen in the CNS.

Persistent virus-specific and clonally expanded antibody-secreting cells respond to induced self-antigen in the CNS.

Journal: Acta neuropathologica

Published: September 06, 2022

Generation of a single-cell B cell atlas of antibody repertoires and transcriptomes to identify signatures associated with antigen specificity.

Generation of a single-cell B cell atlas of antibody repertoires and transcriptomes to identify signatures associated with antigen specificity.

Journal: iScience

Published: August 30, 2022

Phenotypic determinism and stochasticity in antibody repertoires of clonally expanded plasma cells.

Phenotypic determinism and stochasticity in antibody repertoires of clonally expanded plasma cells.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Published: April 29, 2022

Single-cell immune repertoire sequencing of B and T cells in murine models of infection and autoimmunity.

Single-cell immune repertoire sequencing of B and T cells in murine models of infection and autoimmunity.

Journal: Genes and immunity

Published: February 23, 2022

Echidna: integrated simulations of single-cell immune receptor repertoires and transcriptomes.

Echidna: integrated simulations of single-cell immune receptor repertoires and transcriptomes.

Journal: Bioinformatics advances

Published: January 18, 2022

Clonally Expanded Virus-Specific CD8 T Cells Acquire Diverse Transcriptional Phenotypes During Acute, Chronic, and Latent Infections.

Clonally Expanded Virus-Specific CD8 T Cells Acquire Diverse Transcriptional Phenotypes During Acute, Chronic, and Latent Infections.

Journal: Frontiers in immunology

Published: September 24, 2021

Profiling the specificity of clonally expanded plasma cells during chronic viral infection by single-cell analysis.

Profiling the specificity of clonally expanded plasma cells during chronic viral infection by single-cell analysis.

Journal: European journal of immunology

Published: April 29, 2021

Showing 1-12 of 13

Last Updated: 09/26/2026