Rolf S. Kaas

Kongens Lyngby, 2800, Denmark

Last Updated: 09/26/2026

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Found 37 publications

Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models with PathogenFinder2.

Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models with PathogenFinder2.

Journal: Bioinformatics (Oxford, England)

Published: July 25, 2025

Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models with PathogenFinder2.

Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models with PathogenFinder2.

Journal: Bioinformatics (Oxford, England)

Published: July 25, 2025

ListPred: A predictive ML tool for virulence potential and disinfectant tolerance in Listeria monocytogenes.

ListPred: A predictive ML tool for virulence potential and disinfectant tolerance in Listeria monocytogenes.

Journal: Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases

Published: September 24, 2024

Multi-country and intersectoral assessment of cluster congruence between pipelines for genomics surveillance of foodborne pathogens.

Multi-country and intersectoral assessment of cluster congruence between pipelines for genomics surveillance of foodborne pathogens.

Journal: Nature communications

Published: August 14, 2024

Trends in Salmonella Dublin over time in Denmark from food and animal related isolates.

Trends in Salmonella Dublin over time in Denmark from food and animal related isolates.

Journal: Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases

Published: May 31, 2023

Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering.

Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering.

Journal: Communications biology

Published: June 01, 2022

ResFinder - an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes.

ResFinder - an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes.

Journal: Microbial genomics

Published: January 24, 2022

Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns.

Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns.

Journal: Microbiology spectrum

Published: October 06, 2021

ResFinder 4.0 for predictions of phenotypes from genotypes.

ResFinder 4.0 for predictions of phenotypes from genotypes.

Journal: The Journal of antimicrobial chemotherapy

Published: April 17, 2020

Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods.

Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods.

Journal: Scientific data

Published: September 03, 2019

Addressing Learning Needs on the Use of Metagenomics in Antimicrobial Resistance Surveillance.

Addressing Learning Needs on the Use of Metagenomics in Antimicrobial Resistance Surveillance.

Journal: Frontiers in public health

Published: August 23, 2019

The COMPARE Data Hubs.

The COMPARE Data Hubs.

Journal: Database : the journal of biological databases and curation

Published: February 21, 2019

Showing 1-12 of 37

Last Updated: 09/26/2026