Ruochi D. Zhang

Changchun, 130012, China

Last Updated: 09/26/2026

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Found 26 publications

HeFS: Helper-Enhanced Feature Selection via Pareto-Optimized Genetic Search.

HeFS: Helper-Enhanced Feature Selection via Pareto-Optimized Genetic Search.

Journal: Journal of advanced research

Published: December 10, 2025

MolProphecy: Bridging medicinal chemists' knowledge and molecular pre-trained models via a multi-modal framework.

MolProphecy: Bridging medicinal chemists' knowledge and molecular pre-trained models via a multi-modal framework.

Journal: Journal of advanced research

Published: August 11, 2025

AMPCliff: Quantitative definition and benchmarking of activity cliffs in antimicrobial peptides.

AMPCliff: Quantitative definition and benchmarking of activity cliffs in antimicrobial peptides.

Journal: Journal of advanced research

Published: January 31, 2025

PepLand: a large-scale pre-trained peptide representation model for a comprehensive landscape of both canonical and non-canonical amino acids.

PepLand: a large-scale pre-trained peptide representation model for a comprehensive landscape of both canonical and non-canonical amino acids.

Journal: Briefings in bioinformatics

Published: November 04, 2024

An integrated view of the structure and function of the human 4D nucleome.

An integrated view of the structure and function of the human 4D nucleome.

Journal: bioRxiv : the preprint server for biology

Published: November 01, 2024

PepHarmony: a multi-view contrastive learning framework for integrated sequence and structure-based peptide representation.

PepHarmony: a multi-view contrastive learning framework for integrated sequence and structure-based peptide representation.

Journal: Neural networks : the official journal of the International Neural Network Society

Published: October 03, 2024

GraCEImpute: A novel graph clustering autoencoder approach for imputation of single-cell RNA-seq data.

GraCEImpute: A novel graph clustering autoencoder approach for imputation of single-cell RNA-seq data.

Journal: Computers in biology and medicine

Published: April 17, 2024

HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer.

HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer.

Journal: Bioinformatics (Oxford, England)

Published: March 22, 2024

Optimization of binding affinities in chemical space with generative pre-trained transformer and deep reinforcement learning.

Optimization of binding affinities in chemical space with generative pre-trained transformer and deep reinforcement learning.

Journal: F1000Research

Published: February 15, 2024

MolFeSCue: enhancing molecular property prediction in data-limited and imbalanced contexts using few-shot and contrastive learning.

MolFeSCue: enhancing molecular property prediction in data-limited and imbalanced contexts using few-shot and contrastive learning.

Journal: Bioinformatics (Oxford, England)

Published: December 09, 2023

Orchestrating information across tissues via a novel multitask GAT framework to improve quantitative gene regulation relation modeling for survival analysis.

Orchestrating information across tissues via a novel multitask GAT framework to improve quantitative gene regulation relation modeling for survival analysis.

Journal: Briefings in bioinformatics

Published: April 09, 2023

OCMR: A comprehensive framework for optical chemical molecular recognition.

OCMR: A comprehensive framework for optical chemical molecular recognition.

Journal: Computers in biology and medicine

Published: March 30, 2023

Showing 1-12 of 26

Last Updated: 09/26/2026