Ryo Kanada

Kobe, 6500047, Japan

Last Updated: 09/26/2026

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Found 21 publications

Conversion of an agonistic anti-TNFR2 biparatopic antibody into an antagonist by insertion of peptide linkers into the hinge region.

Conversion of an agonistic anti-TNFR2 biparatopic antibody into an antagonist by insertion of peptide linkers into the hinge region.

Journal: The Journal of biological chemistry

Published: April 30, 2025

Tension-induced suppression of allosteric conformational changes coordinates kinesin-1 stepping.

Tension-induced suppression of allosteric conformational changes coordinates kinesin-1 stepping.

Journal: The Journal of cell biology

Published: January 30, 2025

Precision spatiotemporal analysis of large-scale compound-protein interactions through molecular dynamics simulation.

Precision spatiotemporal analysis of large-scale compound-protein interactions through molecular dynamics simulation.

Journal: PNAS nexus

Published: October 10, 2024

Receptor-independent regulation of Gα13 by alpha-1-antitrypsin C-terminal peptides.

Receptor-independent regulation of Gα13 by alpha-1-antitrypsin C-terminal peptides.

Journal: The Journal of biological chemistry

Published: September 11, 2024

Enhanced Coarse-Grained Molecular Dynamics Simulation with a Smoothed Hybrid Potential Using a Neural Network Model.

Enhanced Coarse-Grained Molecular Dynamics Simulation with a Smoothed Hybrid Potential Using a Neural Network Model.

Journal: Journal of chemical theory and computation

Published: December 26, 2023

Enhanced Conformational Sampling with an Adaptive Coarse-Grained Elastic Network Model Using Short-Time All-Atom Molecular Dynamics.

Enhanced Conformational Sampling with an Adaptive Coarse-Grained Elastic Network Model Using Short-Time All-Atom Molecular Dynamics.

Journal: Journal of chemical theory and computation

Published: March 24, 2022

A thermodynamically consistent monte carlo cross-bridge model with a trapping mechanism reveals the role of stretch activation in heart pumping.

A thermodynamically consistent monte carlo cross-bridge model with a trapping mechanism reveals the role of stretch activation in heart pumping.

Journal: Frontiers in physiology

Published: January 15, 2022

Protein-ligand binding affinity prediction of cyclin-dependent kinase-2 inhibitors by dynamically averaged fragment molecular orbital-based interaction energy.

Protein-ligand binding affinity prediction of cyclin-dependent kinase-2 inhibitors by dynamically averaged fragment molecular orbital-based interaction energy.

Journal: Journal of computational chemistry

Published: January 03, 2022

Semi-Implicit Time Integration with Hessian Eigenvalue Corrections for a Larger Time Step in Molecular Dynamics Simulations.

Semi-Implicit Time Integration with Hessian Eigenvalue Corrections for a Larger Time Step in Molecular Dynamics Simulations.

Journal: Journal of chemical theory and computation

Published: August 05, 2021

Microsecond-timescale MD simulation of EGFR minor mutation predicts the structural flexibility of EGFR kinase core that reflects EGFR inhibitor sensitivity.

Microsecond-timescale MD simulation of EGFR minor mutation predicts the structural flexibility of EGFR kinase core that reflects EGFR inhibitor sensitivity.

Journal: NPJ precision oncology

Published: October 01, 2020

High-Precision Atomic Charge Prediction for Protein Systems Using Fragment Molecular Orbital Calculation and Machine Learning.

High-Precision Atomic Charge Prediction for Protein Systems Using Fragment Molecular Orbital Calculation and Machine Learning.

Journal: Journal of chemical information and modeling

Published: June 05, 2020

Coarse-Grained Diffraction Template Matching Model to Retrieve Multiconformational Models for Biomolecule Structures from Noisy Diffraction Patterns.

Coarse-Grained Diffraction Template Matching Model to Retrieve Multiconformational Models for Biomolecule Structures from Noisy Diffraction Patterns.

Journal: Journal of chemical information and modeling

Published: May 30, 2020

Showing 1-12 of 21

Last Updated: 09/26/2026