Sarah J. Oakley

Oxford, ENG, United Kingdom

Last Updated: 09/26/2026

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Found 38 publications

Clinical validation of an optimised metagenomic nanopore sequencing method for detecting viral respiratory pathogens.

Clinical validation of an optimised metagenomic nanopore sequencing method for detecting viral respiratory pathogens.

Journal: The Journal of infection
Published: June 05, 2026

Nanopore adaptive sampling for bacterial identification from periprosthetic joint replacement tissue.

Nanopore adaptive sampling for bacterial identification from periprosthetic joint replacement tissue.

Journal: Microbial genomics
Published: September 24, 2025

Escherichia coli phylogeny drives co-amoxiclav resistance through variable expression of TEM-1 beta-lactamase.

Escherichia coli phylogeny drives co-amoxiclav resistance through variable expression of TEM-1 beta-lactamase.

Journal: Nature communications
Published: November 06, 2024

Comparison of direct cDNA and PCR-cDNA Nanopore sequencing of RNA from Escherichia coli isolates.

Comparison of direct cDNA and PCR-cDNA Nanopore sequencing of RNA from Escherichia coli isolates.

Journal: Microbial genomics
Published: October 25, 2024

Rapid identification of bacterial isolates using microfluidic adaptive channels and multiplexed fluorescence microscopy.

Rapid identification of bacterial isolates using microfluidic adaptive channels and multiplexed fluorescence microscopy.

Journal: Lab on a chip
Published: September 18, 2024

Ribosome phenotypes for rapid classification of antibiotic-susceptible and resistant strains of Escherichia coli.

Ribosome phenotypes for rapid classification of antibiotic-susceptible and resistant strains of Escherichia coli.

Journal: Communications biology
Published: June 18, 2024

Estimating the association of antimicrobial resistance genes with minimum inhibitory concentration in Escherichia coli: an observational study.

Estimating the association of antimicrobial resistance genes with minimum inhibitory concentration in Escherichia coli: an observational study.

Journal: The Lancet. Microbe
Published: May 31, 2024

Author Correction: The plasmidome associated with Gram-negative bloodstream infections: a large-scale observational study using complete plasmid assemblies.

Author Correction: The plasmidome associated with Gram-negative bloodstream infections: a large-scale observational study using complete plasmid assemblies.

Journal: Nature communications
Published: April 09, 2024

Infection Inspection: using the power of citizen science for image-based prediction of antibiotic resistance in Escherichia coli treated with ciprofloxacin.

Infection Inspection: using the power of citizen science for image-based prediction of antibiotic resistance in Escherichia coli treated with ciprofloxacin.

Journal: Scientific reports
Published: January 09, 2024

Evaluation of sequence hybridization for respiratory viruses using the Twist Bioscience Respiratory Virus Research panel and the OneCodex Respiratory Virus sequence analysis workflow.

Evaluation of sequence hybridization for respiratory viruses using the Twist Bioscience Respiratory Virus Research panel and the OneCodex Respiratory Virus sequence analysis workflow.

Journal: Microbial genomics
Published: September 07, 2023

Deep learning and single-cell phenotyping for rapid antimicrobial susceptibility detection in Escherichia coli.

Deep learning and single-cell phenotyping for rapid antimicrobial susceptibility detection in Escherichia coli.

Journal: Communications biology
Published: February 02, 2023

Virus Detection and Identification in Minutes Using Single-Particle Imaging and Deep Learning.

Virus Detection and Identification in Minutes Using Single-Particle Imaging and Deep Learning.

Journal: ACS nano
Published: December 21, 2022
Showing 1-12 of 38

Last Updated: 09/26/2026