Sida Li

Hangzhou, China

Last Updated: 09/26/2026

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Found 14 publications

PepAnno: A structure-aware deep learning framework for bioactive peptide prediction, structural visualization, and physicochemical profiling.

PepAnno: A structure-aware deep learning framework for bioactive peptide prediction, structural visualization, and physicochemical profiling.

Journal: PLoS computational biology
Published: October 21, 2025

InTxDB: interaction data between gram-negative bacteria secreted effectors and host proteins.

InTxDB: interaction data between gram-negative bacteria secreted effectors and host proteins.

Journal: Database : the journal of biological databases and curation
Published: March 18, 2025

DeepSeek-R1 incentivizes reasoning in LLMs through reinforcement learning.

DeepSeek-R1 incentivizes reasoning in LLMs through reinforcement learning.

Journal: Nature
Published: February 14, 2025

AthRiboNC: an Arabidopsis database for ncRNAs with coding potential revealed from ribosome profiling.

AthRiboNC: an Arabidopsis database for ncRNAs with coding potential revealed from ribosome profiling.

Journal: Database : the journal of biological databases and curation
Published: August 26, 2024

ncPlantDB: a plant ncRNA database with potential ncPEP information and cell type-specific interaction.

ncPlantDB: a plant ncRNA database with potential ncPEP information and cell type-specific interaction.

Journal: Nucleic acids research
Published: August 14, 2024

LncLSTA: a versatile predictor unveiling subcellular localization of lncRNAs through long-short term attention.

LncLSTA: a versatile predictor unveiling subcellular localization of lncRNAs through long-short term attention.

Journal: Bioinformatics advances
Published: June 27, 2024

SoyOD: An Integrated Soybean Multi-omics Database for Mining Genes and Biological Research.

SoyOD: An Integrated Soybean Multi-omics Database for Mining Genes and Biological Research.

Journal: Genomics, proteomics & bioinformatics
Published: April 12, 2024

T4SEpp: A pipeline integrating protein language models to predict bacterial type IV secreted effectors.

T4SEpp: A pipeline integrating protein language models to predict bacterial type IV secreted effectors.

Journal: Computational and structural biotechnology journal
Published: September 21, 2023

Systematic single-cell analysis reveals dynamic control of transposable element activity orchestrating the endothelial-to-hematopoietic transition.

Systematic single-cell analysis reveals dynamic control of transposable element activity orchestrating the endothelial-to-hematopoietic transition.

Journal: BMC biology
Published: August 02, 2023

HALD, a human aging and longevity knowledge graph for precision gerontology and geroscience analyses.

HALD, a human aging and longevity knowledge graph for precision gerontology and geroscience analyses.

Journal: Scientific data
Published: May 16, 2023

CropGF: a comprehensive visual platform for crop gene family mining and analysis.

CropGF: a comprehensive visual platform for crop gene family mining and analysis.

Journal: Database : the journal of biological databases and curation
Published: April 06, 2023

mPPI: a database extension to visualize structural interactome in a one-to-many manner.

mPPI: a database extension to visualize structural interactome in a one-to-many manner.

Journal: Database : the journal of biological databases and curation
Published: February 26, 2021
Showing 1-12 of 14

Last Updated: 09/26/2026