Sigrid J. De Keersmaecker

Brussels, BRU, Belgium

Last Updated: 09/26/2026

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Found 132 publications

Genomic characterization of non-CC398 methicillin-resistant Staphylococcus aureus from Belgian livestock reveals high similarity to human-associated lineages.

Genomic characterization of non-CC398 methicillin-resistant Staphylococcus aureus from Belgian livestock reveals high similarity to human-associated lineages.

Journal: Frontiers in public health
Published: May 29, 2026

Enhancing low-level genome-edited crop detection and identification in food mixtures using nanopore adaptive sampling: Rice-Soybean mixture as proof-of-concept.

Enhancing low-level genome-edited crop detection and identification in food mixtures using nanopore adaptive sampling: Rice-Soybean mixture as proof-of-concept.

Journal: NPJ science of food
Published: January 31, 2026

Recovery and microbial host assignment of mobile genetic elements in complex microbiomes: insights from a spiked gut sample.

Recovery and microbial host assignment of mobile genetic elements in complex microbiomes: insights from a spiked gut sample.

Journal: mSystems
Published: January 26, 2026

Filtering for truth: high-precision taxonomic classification in nanopore shotgun metagenomics data through a KMA-based bioinformatic pipeline (KAPTAIN).

Filtering for truth: high-precision taxonomic classification in nanopore shotgun metagenomics data through a KMA-based bioinformatic pipeline (KAPTAIN).

Journal: BMC genomics
Published: November 14, 2025

Fluoroquinolone resistance in Escherichia coli in the broiler production chain: the role of parent stock and hatchery.

Fluoroquinolone resistance in Escherichia coli in the broiler production chain: the role of parent stock and hatchery.

Journal: Poultry science
Published: November 01, 2025

Comparison of whole genome sequencing approaches for Capripox viruses.

Comparison of whole genome sequencing approaches for Capripox viruses.

Journal: BMC genomics
Published: October 15, 2025

Enhancing One Health Through Wastewater-Based Surveillance: Development and Validation of a Multiplex ddPCR Tool to Differentiate Human and Livestock Contributions.

Enhancing One Health Through Wastewater-Based Surveillance: Development and Validation of a Multiplex ddPCR Tool to Differentiate Human and Livestock Contributions.

Journal: Water research
Published: October 08, 2025

Oxford Nanopore Technologies R10 sequencing enables accurate cgMLST-based bacterial outbreak investigation of Neisseria meningitidis and Salmonella enterica when accounting for methylation-related errors.

Oxford Nanopore Technologies R10 sequencing enables accurate cgMLST-based bacterial outbreak investigation of Neisseria meningitidis and Salmonella enterica when accounting for methylation-related errors.

Journal: Journal of clinical microbiology
Published: August 22, 2025

Emergence and genetic heterogeneity of STEC O113:H4: insights from whole-genome sequences of isolates across human and non-human sources.

Emergence and genetic heterogeneity of STEC O113:H4: insights from whole-genome sequences of isolates across human and non-human sources.

Journal: International journal of medical microbiology : IJMM
Published: July 17, 2025

A WGS workflow for identifying genetically modified and foodborne-pathogenic Bacillus isolates.

A WGS workflow for identifying genetically modified and foodborne-pathogenic Bacillus isolates.

Journal: Food chemistry. Molecular sciences
Published: June 13, 2025

Detection of Bacillus production strains and contaminants in food enzyme products.

Detection of Bacillus production strains and contaminants in food enzyme products.

Journal: Food chemistry. Molecular sciences
Published: May 28, 2025

Overcoming challenges in metagenomic AMR surveillance with nanopore sequencing: a case study on fluoroquinolone resistance.

Overcoming challenges in metagenomic AMR surveillance with nanopore sequencing: a case study on fluoroquinolone resistance.

Journal: Frontiers in microbiology
Published: April 18, 2025
Showing 1-12 of 132

Last Updated: 09/26/2026