Sijie Chen

MOE Key Laboratory Of Bioinformatics And Bioinformatics Division
Beijing, China

Last Updated: 09/26/2026

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Found 15 publications

A generic reference defined by consensus peaks for single-cell ATAC-seq data analysis.

A generic reference defined by consensus peaks for single-cell ATAC-seq data analysis.

Journal: Nature communications
Published: March 03, 2025

TFcomb identifies transcription factor combinations for cellular reprogramming based on single-cell multiomics data.

TFcomb identifies transcription factor combinations for cellular reprogramming based on single-cell multiomics data.

Journal: Genome research
Published: August 23, 2024

Dynamic regulation of innate lymphoid cell development during ontogeny.

Dynamic regulation of innate lymphoid cell development during ontogeny.

Journal: Mucosal immunology
Published: June 13, 2024

Single-cell profiling highlight pathogenic myeloid features in house dust mite-induced murine model of airway inflammation.

Single-cell profiling highlight pathogenic myeloid features in house dust mite-induced murine model of airway inflammation.

Journal: Allergy
Published: March 01, 2024

Building a learnable universal coordinate system for single-cell atlas with a joint-VAE model.

Building a learnable universal coordinate system for single-cell atlas with a joint-VAE model.

Journal: Communications biology
Published: August 17, 2023

STEM enables mapping of single-cell and spatial transcriptomics data with transfer learning.

STEM enables mapping of single-cell and spatial transcriptomics data with transfer learning.

Journal: Communications biology
Published: July 20, 2023

Reciprocal regulation of T follicular helper cells and dendritic cells drives colitis development.

Reciprocal regulation of T follicular helper cells and dendritic cells drives colitis development.

Journal: Nature immunology
Published: June 07, 2023

Protocol for profiling cell-centric assembled single-cell human transcriptome data in hECA.

Protocol for profiling cell-centric assembled single-cell human transcriptome data in hECA.

Journal: STAR protocols
Published: August 09, 2022

Intestinal toxicity to CTLA-4 blockade driven by IL-6 and myeloid infiltration.

Intestinal toxicity to CTLA-4 blockade driven by IL-6 and myeloid infiltration.

Journal: The Journal of experimental medicine
Published: August 03, 2022

Cellular features of localized microenvironments in human meniscal degeneration: a single-cell transcriptomic study.

Cellular features of localized microenvironments in human meniscal degeneration: a single-cell transcriptomic study.

Journal: eLife
Published: April 19, 2022

ITHscore: comprehensive quantification of intra-tumor heterogeneity in NSCLC by multi-scale radiomic features.

ITHscore: comprehensive quantification of intra-tumor heterogeneity in NSCLC by multi-scale radiomic features.

Journal: European radiology
Published: February 10, 2022

hECA: The cell-centric assembly of a cell atlas.

hECA: The cell-centric assembly of a cell atlas.

Journal: iScience
Published: December 01, 2021
Showing 1-12 of 15

Last Updated: 09/26/2026