Simona Cocco
Paris, 75005, France
Last Updated: 09/26/2026
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Found 54 publications
Constrained evolutionary funnels shape viral immune escape.
Journal: Proceedings of the National Academy of Sciences of the United States of America
Published: April 15, 2026
Constrained Evolutionary Funnels Shape Viral Immune Escape.
Journal: bioRxiv : the preprint server for biology
Published: November 24, 2025
A vascular code for speed in the spatial navigation system.
Journal: Cell reports
Published: June 24, 2025
Evaluating SARS-CoV-2 antibody resilience via prediction and design of escape viral variants.
Journal: Cell systems
Published: June 23, 2025
Linking brain and behavior states in Zebrafish Larvae locomotion using hidden Markov models.
Journal: PLoS computational biology
Published: April 04, 2025
Functional effects of mutations in proteins can be predicted and interpreted by guided selection of sequence covariation information.
Journal: Proceedings of the National Academy of Sciences of the United States of America
Published: June 18, 2024
Designing molecular RNA switches with Restricted Boltzmann machines.
Journal: Nature communications
Published: May 08, 2024
Deciphering the Code of Viral-Host Adaptation Through Maximum-Entropy Nucleotide Bias Models.
Journal: Molecular biology and evolution
Published: February 29, 2024
Repeats mimic pathogen-associated patterns across a vast evolutionary landscape.
Journal: Cell genomics
Published: November 03, 2023
Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessment.
Journal: PLoS computational biology
Published: May 25, 2023
Infer global, predict local: Quantity-relevance trade-off in protein fitness predictions from sequence data.
Journal: PLoS computational biology
Published: February 04, 2023
Last Updated: 09/26/2026