Sun M. Kim

Seoul, Republic of Korea

Last Updated: 09/26/2026

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Found 46 publications

Transcriptome-conditioned molecule generation via gene interaction-aware fragment modeling with a GPT-based architecture.

Transcriptome-conditioned molecule generation via gene interaction-aware fragment modeling with a GPT-based architecture.

Journal: Scientific reports
Published: June 17, 2025

Coevolutionary signals in multiple sequence alignments improve virulence factor prediction with an MSA Transformer.

Coevolutionary signals in multiple sequence alignments improve virulence factor prediction with an MSA Transformer.

Journal: Scientific reports
Published: May 15, 2025

Identification of severity related mutation hotspots in SARS-CoV-2 using a density-based clustering approach.

Identification of severity related mutation hotspots in SARS-CoV-2 using a density-based clustering approach.

Journal: BioData mining
Published: March 28, 2025

Fate-tox: fragment attention transformer for E(3)-equivariant multi-organ toxicity prediction.

Fate-tox: fragment attention transformer for E(3)-equivariant multi-organ toxicity prediction.

Journal: Journal of cheminformatics
Published: January 22, 2025

ChemAP: predicting drug approval with chemical structures before clinical trial phase by leveraging multi-modal embedding space and knowledge distillation.

ChemAP: predicting drug approval with chemical structures before clinical trial phase by leveraging multi-modal embedding space and knowledge distillation.

Journal: Scientific reports
Published: July 22, 2024

Multi-layered knowledge graph neural network reveals pathway-level agreement of three breast cancer multi-gene assays.

Multi-layered knowledge graph neural network reveals pathway-level agreement of three breast cancer multi-gene assays.

Journal: Computational and structural biotechnology journal
Published: January 27, 2024

Increased local DNA methylation disorder in AMLs with DNMT3A-destabilizing variants and its clinical implication.

Increased local DNA methylation disorder in AMLs with DNMT3A-destabilizing variants and its clinical implication.

Journal: Nature communications
Published: June 28, 2023

Identification of VWA5A as a novel biomarker for inhibiting metastasis in breast cancer by machine-learning based protein prioritization.

Identification of VWA5A as a novel biomarker for inhibiting metastasis in breast cancer by machine-learning based protein prioritization.

Journal: Scientific reports
Published: May 31, 2023

GOAT: Gene-level biomarker discovery from multi-Omics data using graph ATtention neural network for eosinophilic asthma subtype.

GOAT: Gene-level biomarker discovery from multi-Omics data using graph ATtention neural network for eosinophilic asthma subtype.

Journal: Bioinformatics (Oxford, England)
Published: April 25, 2023

Biomedical knowledge graph learning for drug repurposing by extending guilt-by-association to multiple layers.

Biomedical knowledge graph learning for drug repurposing by extending guilt-by-association to multiple layers.

Journal: Nature communications
Published: December 13, 2022

Improved drug response prediction by drug target data integration via network-based profiling.

Improved drug response prediction by drug target data integration via network-based profiling.

Journal: Briefings in bioinformatics
Published: November 19, 2022

AutoCoV: tracking the early spread of COVID-19 in terms of the spatial and temporal patterns from embedding space by K-mer based deep learning.

AutoCoV: tracking the early spread of COVID-19 in terms of the spatial and temporal patterns from embedding space by K-mer based deep learning.

Journal: BMC bioinformatics
Published: April 11, 2022
Showing 1-12 of 46

Last Updated: 09/26/2026