Tatsuya Ohyama

Kobe, 6500047, Japan

Last Updated: 09/26/2026

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Found 35 publications

Exploring Nucleic Acid Structure and Function with Molecular Dynamics and Fragment Molecular Orbital Methods.

Exploring Nucleic Acid Structure and Function with Molecular Dynamics and Fragment Molecular Orbital Methods.

Journal: Methods in molecular biology (Clifton, N.J.)

Published: August 16, 2026

Twisting tetraplex DNA: A strand dynamics regulating i-motif function in diverse molecular crowding environments.

Twisting tetraplex DNA: A strand dynamics regulating i-motif function in diverse molecular crowding environments.

Journal: Nucleic acids research

Published: December 17, 2024

Imperfect G-quadruplex as an emerging candidate for transcriptional regulation.

Imperfect G-quadruplex as an emerging candidate for transcriptional regulation.

Journal: Nucleic acids research

Published: October 23, 2024

Controlling the Local Conformation of RNA G-Quadruplex Results in Reduced RNA/Peptide Cytotoxic Accumulation Associated with C9orf72 ALS/FTD.

Controlling the Local Conformation of RNA G-Quadruplex Results in Reduced RNA/Peptide Cytotoxic Accumulation Associated with C9orf72 ALS/FTD.

Journal: Small methods

Published: September 30, 2024

Theranostic approach to specifically targeting the interloop region of BCL2 i-motif DNA by crystal violet.

Theranostic approach to specifically targeting the interloop region of BCL2 i-motif DNA by crystal violet.

Journal: Scientific reports

Published: May 17, 2023

Quantum Chemical Interaction Analysis between SARS-CoV-2 Main Protease and Ensitrelvir Compared with Its Initial Screening Hit.

Quantum Chemical Interaction Analysis between SARS-CoV-2 Main Protease and Ensitrelvir Compared with Its Initial Screening Hit.

Journal: The journal of physical chemistry letters

Published: April 06, 2023

Nearest-neighbor parameters for the prediction of RNA duplex stability in diverse in vitro and cellular-like crowding conditions.

Nearest-neighbor parameters for the prediction of RNA duplex stability in diverse in vitro and cellular-like crowding conditions.

Journal: Nucleic acids research

Published: November 24, 2022

Intramolecular G-quadruplex-hairpin loop structure competition of a GC-rich exon region in the TMPRSS2 gene.

Intramolecular G-quadruplex-hairpin loop structure competition of a GC-rich exon region in the TMPRSS2 gene.

Journal: Chemical communications (Cambridge, England)

Published: November 23, 2021

Effect of DNA modifications on the transition between canonical and non-canonical DNA structures in CpG islands during senescence.

Effect of DNA modifications on the transition between canonical and non-canonical DNA structures in CpG islands during senescence.

Journal: RSC advances

Published: September 27, 2021

Correction to 'Improved nearest-neighbor parameters for the stability of RNA/DNA hybrids under a physiological condition'.

Correction to 'Improved nearest-neighbor parameters for the stability of RNA/DNA hybrids under a physiological condition'.

Journal: Nucleic acids research

Published: September 14, 2021

Special Features of COVID-19 in the FMODB: Fragment Molecular Orbital Calculations and Interaction Energy Analysis of SARS-CoV-2-Related Proteins.

Special Features of COVID-19 in the FMODB: Fragment Molecular Orbital Calculations and Interaction Energy Analysis of SARS-CoV-2-Related Proteins.

Journal: Journal of chemical information and modeling

Published: September 10, 2021

Effect of Molecular Crowding on the Stability of RNA G-Quadruplexes with Various Numbers of Quartets and Lengths of Loops.

Effect of Molecular Crowding on the Stability of RNA G-Quadruplexes with Various Numbers of Quartets and Lengths of Loops.

Journal: Biochemistry

Published: June 25, 2020

Showing 1-12 of 35

Last Updated: 09/26/2026