Tommi Maklin
Helsinki, Finland
Last Updated: 09/26/2026
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Found 18 publications
A more complete picture: capturing single nucleotide variant diversity in extended-spectrum beta-lactamase producing Escherichia coli using post-enrichment metagenomics.
Journal: Microbial genomics
Published: June 22, 2026
Sequence type and strain-level detection of Klebsiella pneumoniae in culture-enriched bacterial metagenomes: comparative performance of mSWEEP and StrainGE bioinformatic tools.
Journal: Microbial genomics
Published: February 11, 2026
Strain-level transmission inference across multi-kingdom metagenomic data using TRACS.
Journal: Nature microbiology
Published: February 26, 2025
Basic reproduction number varies markedly between closely related pandemic Escherichia coli clones.
Journal: Nature communications
Published: January 08, 2025
Geographical variation in the incidence of colorectal cancer and urinary tract cancer is associated with population exposure to colibactin-producing Escherichia coli.
Journal: The Lancet. Microbe
Published: June 20, 2024
Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing.
Journal: mBio
Published: April 29, 2024
Seamless, rapid, and accurate analyses of outbreak genomic data using split k-mer analysis.
Journal: Genome research
Published: April 08, 2024
Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan.
Journal: Nature communications
Published: February 14, 2024
Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes.
Journal: Bioinformatics (Oxford, England)
Published: June 30, 2023
Last Updated: 09/26/2026