Valentina Boeva

Paris, France

Last Updated: 09/26/2026

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Found 61 publications

Chiron3D: an interpretable deep learning framework for understanding the DNA code of chromatin looping.

Chiron3D: an interpretable deep learning framework for understanding the DNA code of chromatin looping.

Journal: Bioinformatics (Oxford, England)
Published: August 24, 2026

Striping artifact removal in VisiumHD data through nuclear counts modeling.

Striping artifact removal in VisiumHD data through nuclear counts modeling.

Journal: Bioinformatics (Oxford, England)
Published: April 11, 2026

Correction: Targeted Therapy of TERT-Rearranged Neuroblastoma with BET Bromodomain Inhibitor and Proteasome Inhibitor Combination Therapy.

Correction: Targeted Therapy of TERT-Rearranged Neuroblastoma with BET Bromodomain Inhibitor and Proteasome Inhibitor Combination Therapy.

Journal: Clinical cancer research : an official journal of the American Association for Cancer Research
Published: February 11, 2026

Representation learning of single-cell RNA-seq data.

Representation learning of single-cell RNA-seq data.

Journal: RNA (New York, N.Y.)
Published: January 08, 2026

High-resolution time-lapse imaging of droplet-cell dynamics via optimal transport and contrastive learning.

High-resolution time-lapse imaging of droplet-cell dynamics via optimal transport and contrastive learning.

Journal: Lab on a chip
Published: October 10, 2025

CDState Resolves Malignant Cell Heterogeneity from Bulk Tumor RNA-Sequencing Data.

CDState Resolves Malignant Cell Heterogeneity from Bulk Tumor RNA-Sequencing Data.

Journal: Cancer research
Published: September 11, 2025

UniversalEPI: robust prediction of cell type-specific and differential chromatin interactions from DNA sequence and chromatin accessibility.

UniversalEPI: robust prediction of cell type-specific and differential chromatin interactions from DNA sequence and chromatin accessibility.

Journal: Nucleic acids research
Published: July 03, 2025

Early feature extraction drives model performance in high-resolution chromatin accessibility prediction.

Early feature extraction drives model performance in high-resolution chromatin accessibility prediction.

Journal: Genome research
Published: June 11, 2025

Robust and efficient annotation of cell states through gene signature scoring.

Robust and efficient annotation of cell states through gene signature scoring.

Journal: Genome research
Published: May 14, 2025

CanSig Benchmarks Methods for Reproducible Cancer Cell State Discovery from Single-Cell Transcriptomic Data.

CanSig Benchmarks Methods for Reproducible Cancer Cell State Discovery from Single-Cell Transcriptomic Data.

Journal: Cancer research
Published: February 28, 2025

MIRO2-mediated mitochondrial transfer from cancer cells induces cancer-associated fibroblast differentiation.

MIRO2-mediated mitochondrial transfer from cancer cells induces cancer-associated fibroblast differentiation.

Journal: Nature cancer
Published: February 11, 2025

Exploring RNA cargo in extracellular vesicles for pleural mesothelioma detection.

Exploring RNA cargo in extracellular vesicles for pleural mesothelioma detection.

Journal: BMC cancer
Published: November 29, 2024
Showing 1-12 of 61

Last Updated: 09/26/2026