Yasubumi Sakakibara

Yokohama, Japan

Last Updated: 09/26/2026

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Found 60 publications

Cross-species gene redesign leveraging ortholog information and generative modeling.

Cross-species gene redesign leveraging ortholog information and generative modeling.

Journal: Nature communications

Published: June 13, 2025

Leveraging tree-transformer VAE with fragment tokenization for high-performance large chemical model generation.

Leveraging tree-transformer VAE with fragment tokenization for high-performance large chemical model generation.

Journal: Communications chemistry

Published: February 25, 2025

Validation of machine learning-assisted screening of PKC ligands: PKC binding affinity and activation.

Validation of machine learning-assisted screening of PKC ligands: PKC binding affinity and activation.

Journal: Bioscience, biotechnology, and biochemistry

Published: December 23, 2024

Transcriptomic dynamics of petal development in the one-day flower species, Japanese morning glory (Ipomoea nil).

Transcriptomic dynamics of petal development in the one-day flower species, Japanese morning glory (Ipomoea nil).

Journal: Plant & cell physiology

Published: October 04, 2024

Decoding host-microbiome interactions through co-expression network analysis within the non-human primate intestine.

Decoding host-microbiome interactions through co-expression network analysis within the non-human primate intestine.

Journal: mSystems

Published: April 01, 2024

Deep learning of multimodal networks with topological regularization for drug repositioning.

Deep learning of multimodal networks with topological regularization for drug repositioning.

Journal: Journal of cheminformatics

Published: January 14, 2024

Variational autoencoder-based chemical latent space for large molecular structures with 3D complexity.

Variational autoencoder-based chemical latent space for large molecular structures with 3D complexity.

Journal: Communications chemistry

Published: June 16, 2023

Automatic Detection and Measurement of Renal Cysts in Ultrasound Images: A Deep Learning Approach.

Automatic Detection and Measurement of Renal Cysts in Ultrasound Images: A Deep Learning Approach.

Journal: Healthcare (Basel, Switzerland)

Published: December 28, 2022

Direct Inference of Base-Pairing Probabilities with Neural Networks Improves Prediction of RNA Secondary Structures with Pseudoknots.

Direct Inference of Base-Pairing Probabilities with Neural Networks Improves Prediction of RNA Secondary Structures with Pseudoknots.

Journal: Genes

Published: September 28, 2022

Intraintestinal Analysis of the Functional Activity of Microbiomes and Its Application to the Common Marmoset Intestine.

Intraintestinal Analysis of the Functional Activity of Microbiomes and Its Application to the Common Marmoset Intestine.

Journal: mSystems

Published: August 25, 2022

A Comparison of Bioinformatics Pipelines for Enrichment Illumina Next Generation Sequencing Systems in Detecting SARS-CoV-2 Virus Strains.

A Comparison of Bioinformatics Pipelines for Enrichment Illumina Next Generation Sequencing Systems in Detecting SARS-CoV-2 Virus Strains.

Journal: Genes

Published: June 30, 2022

AI and computational chemistry-accelerated development of an alotaketal analogue with conventional PKC selectivity.

AI and computational chemistry-accelerated development of an alotaketal analogue with conventional PKC selectivity.

Journal: Chemical communications (Cambridge, England)

Published: May 24, 2022

Showing 1-12 of 60

Last Updated: 09/26/2026