Ziye Xu

No. 79 Qingchun Road
Hangzhou, 310003, China

Last Updated: 09/26/2026

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Found 42 publications

Highly Sensitive Spatial Host-Microbiome Transcriptomics in FFPE Tissues via Iterative Hydrogel Expansion.

Highly Sensitive Spatial Host-Microbiome Transcriptomics in FFPE Tissues via Iterative Hydrogel Expansion.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Published: April 03, 2026

Microbial single-cell transcriptomics links gut microbiota functional states to metabolic changes in male mice.

Microbial single-cell transcriptomics links gut microbiota functional states to metabolic changes in male mice.

Journal: Nature communications

Published: April 03, 2026

Spatial Total RNA Sequencing of Formalin-Fixed Paraffin-Embedded Tissue by spRandom-seq.

Spatial Total RNA Sequencing of Formalin-Fixed Paraffin-Embedded Tissue by spRandom-seq.

Journal: Small (Weinheim an der Bergstrasse, Germany)

Published: March 14, 2026

A Single-Cell Transcriptomic Atlas of the Ovine Rumen Microbiome Characterizes Lineage-Specific Metabolic Shifts Associated with Host Heat Tolerance.

A Single-Cell Transcriptomic Atlas of the Ovine Rumen Microbiome Characterizes Lineage-Specific Metabolic Shifts Associated with Host Heat Tolerance.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Published: March 04, 2026

BACON: decoding the dynamic social networks of complex microbial communities at single-cell resolution.

BACON: decoding the dynamic social networks of complex microbial communities at single-cell resolution.

Journal: Briefings in bioinformatics

Published: January 09, 2026

Profiling the total transcriptome of single nuclei in archived samples with snRandom-seq.

Profiling the total transcriptome of single nuclei in archived samples with snRandom-seq.

Journal: Nature reviews. Genetics

Published: January 17, 2025

Fast Encapsulation of Microbes into Dissolvable Hydrogel Beads Enables High-Throughput Microbial Single-Cell RNA Sequencing of Clinical Microbiome Samples.

Fast Encapsulation of Microbes into Dissolvable Hydrogel Beads Enables High-Throughput Microbial Single-Cell RNA Sequencing of Clinical Microbiome Samples.

Journal: Advanced materials (Deerfield Beach, Fla.)

Published: January 08, 2025

High-Throughput Single-Nucleus RNA Profiling of Minimal Puncture FFPE Samples Reveals Spatiotemporal Heterogeneity of Cancer.

High-Throughput Single-Nucleus RNA Profiling of Minimal Puncture FFPE Samples Reveals Spatiotemporal Heterogeneity of Cancer.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Published: September 03, 2024

Single microorganism RNA sequencing of microbiomes using smRandom-Seq.

Single microorganism RNA sequencing of microbiomes using smRandom-Seq.

Journal: Nature protocols

Published: September 01, 2024

Advances and applications in single-cell and spatial genomics.

Advances and applications in single-cell and spatial genomics.

Journal: Science China. Life sciences

Published: August 20, 2024

Single-nucleus total RNA sequencing of formalin-fixed paraffin-embedded samples using snRandom-seq.

Single-nucleus total RNA sequencing of formalin-fixed paraffin-embedded samples using snRandom-seq.

Journal: Nature protocols

Published: August 15, 2024

Dietary "Beigeing" Fat Contains More Phosphatidylserine and Enhances Mitochondrial Function while Counteracting Obesity.

Dietary "Beigeing" Fat Contains More Phosphatidylserine and Enhances Mitochondrial Function while Counteracting Obesity.

Journal: Research (Washington, D.C.)

Published: June 18, 2024

Showing 1-12 of 42

Last Updated: 09/26/2026