A Prospective Study to Identify Known and Unknown Bacterial Pathogens in Patients With Pleural Infections Using a Combination of Conventional Culture and Next-generation Sequencing Approaches

Status: Recruiting
Location: See location...
Intervention Type: Diagnostic test
Study Type: Observational
SUMMARY

Objective: To identify known and unknown bacterial pathogens in patients with pleural infections using a combination of conventional culture and next-generation sequencing approaches. Hypothesis to be tested: The investigators hypothesize that next-generation sequencing will serve as a comprehensive approach to identify culturable and unculturable bacterial pathogens in patients with pleural infections compared to the conventional culture. Design and subjects: This is a prospective cohort study to be conducted in the medical department of a tertiary care hospital in Hong Kong involving patients with pleural infection. Patients will be recruited if a pleural infection is suspected, with pleural fluid sampled and a 6-month follow-up. The clinical management by the medical team will not be interfered. Study instruments: Pleural fluid will be collected for conventional culture, 16S amplicon and shotgun metagenomic sequencing in parallel. The clinical information will be collected to clarify the causative correlation between symptoms, clinical outcomes and pathogen infections. Main outcome measures: The full spectrum of causative bacteria in pleural infection will be characterized. The diagnostic performance of identifying causative bacteria in pleural infection will be compared between the studied methods. The antimicrobial resistance pattern, clinical outcomes of pleural infection will also be compared between groups as categorized by the pattern of bacteriology identified by different methods. Data analysis: With reference to the conventional culture as the gold standard, sensitivity, specificity, positive predictive values and negative predictive values of 16S ribosomal ribonucleic acid (rRNA) gene amplicon and shotgun metagenomic sequencing will be calculated.

Eligibility
Participation Requirements
Sex: All
Minimum Age: 18
Healthy Volunteers: f
View:

• Patients hospitalized for suspected pleural infection, irrespective of community-acquired or hospital-acquired in nature

• Pleural tapping will be performed for pleural fluid analysis

• Chinese ethnicity

• Aged 18 years old or above

• Pleural effusion is not related to any infection including pneumonia (e.g. malignancy, fluid overload)

• Pleural tapping will be performed for pleural fluid analysis

• Chinese ethnicity

• Aged 18 years old or above

Locations
Other Locations
Hong Kong Special Administrative Region
Chinese University of Hong Kong
RECRUITING
Hong Kong
Contact Information
Primary
Ka Pang Chan, MBChB
chankapang@gmail.com
35052211
Time Frame
Start Date: 2023-06-01
Estimated Completion Date: 2027-05-31
Participants
Target number of participants: 115
Treatments
Parapneumonic effusion
Patients with parapneumonic effusion
Non-parapneumonic effusion
Patients with pleural effusion but not parapneumonic in nature
Related Therapeutic Areas
Sponsors
Leads: Chinese University of Hong Kong

This content was sourced from clinicaltrials.gov

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