Combining Exome and Transcriptome Data to Unravel the Genetic Basis of the Lissencephalies

Status: Unknown
Location: See location...
Intervention Type: Diagnostic test
Study Type: Interventional
Study Phase: Not Applicable
SUMMARY

Malformations of cortical development (MCD) are a heterogenous group of brain malformations including lissencephaly, heterotopia and polymicrogyria. The lissencephaly spectrum (including lissencephaly, pachygyria and subcortical band heterotopia) is a well-defined group of MCD with a strong monogenetic basis. Using current molecular techniques, a causative variant is detected in approximately 80% of individuals with lissencephaly. In a routine diagnostic setting, exome-based gene panels are most frequently used while whole exome sequencing (WES) and whole genome sequencing (WGS) are increasingly being implemented. Both techniques have their shortcomings including the detection of small copy number variants, the identification of pathogenic variants in non-coding regions as well as variant interpretation. The parallel use of quantitative RNA sequencing, measuring differences in RNA expression could be a possible solution for these shortcomings. The proposed research project will for the first time 1) evaluate the added value of WES/WGS combined with quantitative RNA sequencing for the identification of novel genes in individuals with lissencephaly, 2) identify the optimal sampling tissue for RNA sequencing in complex neurological phenotypes and 3) use RNA expression data to provide an evidence base for the current lissencephaly classification.

Eligibility
Participation Requirements
Sex: All
Healthy Volunteers: f
View:

⁃ Overall:

• anomaly on MRI of the lissencephaly spectrum (lissencephaly, pachygyria, subcortical band heterotopia

⁃ Diagnostic track:

• No established genetic diagnosis by conventional WES/WGS

⁃ Research track:

• An established genetic diagnosis by conventinal WES/WGS

Locations
Other Locations
Belgium
UZ Brussel
Jette
Contact Information
Primary
Ellen RIJCKMANS, Dr
ellen.rijckmans@uzbrussel.be
+32476328726
Backup
Katrien STOUFFS, Prof Dr
katrien.stouffs@uzbrussel.be
Time Frame
Start Date: 2022-01
Completion Date: 2025-09
Participants
Target number of participants: 50
Treatments
Other: RNA sequencing in genetically solved lissencephaly cases
RNA expression patterns in lissencephalies. RNA sequencing will be applied to the genetically solved lissencephaly cases. The acquired information on RNA expression patterns will be implemented in unsolved lissencephaly cases.
Other: RNA sequencing in genetically unsolved lissencephaly cases
Obtain a genetic diagnosis in unsolved lissencephaly cases by implementation of RNA expression patterns obtained in arm 1.
Sponsors
Leads: Universitair Ziekenhuis Brussel
Collaborators: Marguerite - Marie Delacroix Foundation

This content was sourced from clinicaltrials.gov

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